Simona Carini
Programmer
Medicine
School of Medicine

Education & Training

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• M.A. Mathematics and Computer Science Mills College, Oakland, CA 2001
• B.A. Letters Catholic University of the Sacred Heart, Milan, Italy 1991
• Nursing Diploma Nursing School Nursing School "Renato Donatelli", Perugia, Italy 1984

Publications (28)

Top publication keywords:
Randomized Controlled Trials as TopicDatabases, FactualHuman ExperimentationClinical Trials as TopicInformation Storage and RetrievalResearch DesignMedical Subject HeadingsSystematized Nomenclature of MedicineEligibility DeterminationDatabases as TopicBiomedical ResearchReview Literature as TopicClinical Trials, Phase IV as TopicEvidence-Based MedicineDatabase Management Systems

• Ontology-based categorization of clinical studies by their conditions.
  Journal of biomedical informatics 2022 Liu H, Carini S, Chen Z, Phillips Hey S, Sim I, Weng C
• Standardized Integration of Person-Generated Data Into Routine Clinical Care.
  JMIR mHealth and uHealth 2022 Zeng B, Bove R, Carini S, Lee JS, Pollak JP, Schleimer E, Sim I
• Sensor Data Integration: A New Cross-Industry Collaboration to Articulate Value, Define Needs, and Advance a Framework for Best Practices.
  Journal of medical Internet research 2021 Clay I, Angelopoulos C, Bailey AL, Blocker A, Carini S, Carvajal R, Drummond D, McManus KF, Oakley-Girvan I, Patel KB, Szepietowski P, Goldsack JC
• Recent Academic Research on Clinically Relevant Digital Measures: Systematic Review.
  Journal of medical Internet research 2021 Shandhi MMH, Goldsack JC, Ryan K, Bennion A, Kotla AV, Feng A, Jiang Y, Wang WK, Hurst T, Patena J, Carini S, Chung J, Dunn J
• Chia, a large annotated corpus of clinical trial eligibility criteria.
  Scientific data 2020 Kury F, Butler A, Yuan C, Fu LH, Sun Y, Liu H, Sim I, Carini S, Weng C

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• A randomized trial provided new evidence on the accuracy and efficiency of traditional vs. electronically annotated abstraction approaches in systematic reviews.
  Journal of clinical epidemiology 2019 Li T, Saldanha IJ, Jap J, Smith BT, Canner J, Hutfless SM, Branch V, Carini S, Chan W, de Bruijn B, Wallace BC, Walsh SA, Whamond EJ, Murad MH, Sim I, Berlin JA, Lau J, Dickersin K, Schmid CH
• Evaluating Data Abstraction Assistant, a novel software application for data abstraction during systematic reviews: protocol for a randomized controlled trial.
  Systematic reviews 2016 Saldanha IJ, Schmid CH, Lau J, Dickersin K, Berlin JA, Jap J, Smith BT, Carini S, Chan W, De Bruijn B, Wallace BC, Hutfless SM, Sim I, Murad MH, Walsh SA, Whamond EJ, Li T
• Multivariate analysis of the population representativeness of related clinical studies.
  Journal of biomedical informatics 2016 He Z, Ryan P, Hoxha J, Wang S, Carini S, Sim I, Weng C
• Visual aggregate analysis of eligibility features of clinical trials.
  Journal of biomedical informatics 2015 He Z, Carini S, Sim I, Weng C
• A method for analyzing commonalities in clinical trial target populations.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2014 He Z, Carini S, Hao T, Sim I, Weng C
• The Ontology of Clinical Research (OCRe): an informatics foundation for the science of clinical research.
  Journal of biomedical informatics 2013 Sim I, Tu SW, Carini S, Lehmann HP, Pollock BH, Peleg M, Wittkowski KM
• Sponsorship and design characteristics of trials registered in ClinicalTrials.gov.
  Contemporary clinical trials 2013 Roumiantseva D, Carini S, Sim I, Wagner TH
• Deriving an abstraction network to support quality assurance in OCRe.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2012 Ochs C, Agrawal A, Perl Y, Halper M, Tu SW, Carini S, Sim I, Noy N, Musen M, Geller J
• Ontology-based federated data access to human studies information.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2012 Sim I, Carini S, Tu SW, Detwiler LT, Brinkley J, Mollah SA, Burke K, Lehmann HP, Chakraborty S, Wittkowski KM, Pollock BH, Johnson TM, Huser V, Human Studies Database Project
• EliXR-TIME: A Temporal Knowledge Representation for Clinical Research Eligibility Criteria.
  AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science 2012 Boland MR, Tu SW, Carini S, Sim I, Weng C
• Network analysis of clinical trials on depression: implications for comparative effectiveness research.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2010 Bhavnani SK, Carini S, Ross J, Sim I
• ExaCT: automatic extraction of clinical trial characteristics from journal publications.
  BMC medical informatics and decision making 2010 Kiritchenko S, de Bruijn B, Carini S, Martin J, Sim I
• A practical method for transforming free-text eligibility criteria into computable criteria.
  Journal of biomedical informatics 2010 Tu SW, Peleg M, Carini S, Bobak M, Ross J, Rubin D, Sim I
• Analysis of eligibility criteria complexity in clinical trials.
  Summit on translational bioinformatics 2010 Ross J, Tu S, Carini S, Sim I
• Ontology mapping and data discovery for the translational investigator.
  Summit on translational bioinformatics 2010 Wynden R, Weiner MG, Sim I, Gabriel D, Casale M, Carini S, Hastings S, Ervin D, Tu S, Gennari JH, Anderson N, Mobed K, Lakshminarayanan P, Massary M, Cucina RJ
• The human studies database project: federating human studies design data using the ontology of clinical research.
  Summit on translational bioinformatics 2010 Sim I, Carini S, Tu S, Wynden R, Pollock BH, Mollah SA, Gabriel D, Hagler HK, Scheuermann RH, Lehmann HP, Wittkowski KM, Nahm M, Bakken S
• Development and evaluation of a study design typology for human research.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2009 Carini S, Pollock BH, Lehmann HP, Bakken S, Barbour EM, Gabriel D, Hagler HK, Harper CR, Mollah SA, Nahm M, Nguyen HH, Scheuermann RH, Sim I
• An interactive tool for visualizing design heterogeneity in clinical trials.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2008 Hernandez ME, Carini S, Storey MA, Sim I
• Automated information extraction of key trial design elements from clinical trial publications.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2008 de Bruijn B, Carini S, Kiritchenko S, Martin J, Sim I
• An ontology of randomized controlled trials for evidence-based practice: content specification and evaluation using the competency decomposition method.
  Journal of biomedical informatics 2004 Sim I, Olasov B, Carini S
• Trial bank publishing: phase I results.
  Studies in health technology and informatics 2004 Sim I, Carini S, Olasov B, Jeng S
• SysBank: a knowledge base for systematic reviews of randomized clinical trials.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2003 Carini S, Sim I
• The Trial Bank system: capturing randomized trials for evidence-based medicine.
  AMIA ... Annual Symposium proceedings. AMIA Symposium 2003 Sim I, Olasov B, Carini S