Shola Olagoke, PhD
Postdoctoral Scholar
Pediatrics
School of Medicine

Publications (16)

Top publication keywords:
Cervix UteriPhylogenyChlamydia InfectionsPhascolarctidaeGenome, BacterialHost-Pathogen InteractionsInterferon-gammaRetroviridaeRetroviridae InfectionsChlamydia trachomatisTrachomaDrug Resistance, BacterialWhole Genome SequencingViral VaccinesMetagenomics

• Phylogenetic diversity, functional pathways, and network interactions of ocular chlamydia-like organisms (CLOs) in trachoma-endemic Ethiopia.
  mBio 2026 Olagoke O, Zheng X, Chung S, Mengistie HD, Asfaha K, Read TD, Dean D
• CtGAP 2.0: enhanced genome assembly, strain resolution, and phylogenomics for Chlamydia trachomatis.
  Microbiology resource announcements 2026 Olagoke O, Read TD, Dean D
• Azithromycin alters the microbiome composition, function and resistome in women with Chlamydia trachomatis infections.
  NPJ biofilms and microbiomes 2025 Bommana S, Olagoke O, Hu YJ, Wang R, Kama M, Dehdashti M, Kodimerla R, Read TD, Dean D
• Transcriptional profiling of Chlamydia trachomatis and its host in an ex vivo endocervical primary cell culture system using dual RNA sequencing.
  Frontiers in cellular and infection microbiology 2025 Olagoke O, Chittaranjan S, Dean D
• Effect of Azithromycin treatment on the microbial composition, functional dynamics and resistomes of endocervical, vaginal and rectal microbiomes of women in Fiji with Chlamydia trachomatis infection.
  bioRxiv : the preprint server for biology 2025 Bommana S, Olagoke S, Hu Y, Wang R, Kama M, Dehdashti M, Kodimerla R, Read T, Dean D

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• Evaluating the feasibility, sensitivity, and specificity of next-generation molecular methods for pleural infection diagnosis.
  Microbiology spectrum 2025 Bell PT, Baird T, Goddard J, Olagoke OS, Burke A, Subedi S, Davey TR, Anderson J, Sarovich DS, Price EP
• Whole-genome automated assembly pipeline for Chlamydia trachomatis strains from reference, in vitro and clinical samples using the integrated CtGAP pipeline.
  NAR genomics and bioinformatics 2025 Olagoke O, Aziz A, Zhu LH, Read TD, Dean D
• Rapid fluoroquinolone resistance detection in Pseudomonas aeruginosa using mismatch amplification mutation assay-based real-time PCR.
  Journal of medical microbiology 2022 Madden DE, McCarthy KL, Bell SC, Olagoke O, Baird T, Neill J, Ramsay KA, Kidd TJ, Stewart AG, Subedi S, Choong K, Fraser TA, Sarovich DS, Price EP
• Express Yourself: Quantitative Real-Time PCR Assays for Rapid Chromosomal Antimicrobial Resistance Detection in Pseudomonas aeruginosa.
  Antimicrobial agents and chemotherapy 2022 Madden DE, Olagoke O, Baird T, Neill J, Ramsay KA, Fraser TA, Bell SC, Sarovich DS, Price EP
• Genomic diversity and antimicrobial resistance of Prevotella species isolated from chronic lung disease airways.
  Microbial genomics 2022 Webb KA, Olagoke O, Baird T, Neill J, Pham A, Wells TJ, Ramsay KA, Bell SC, Sarovich DS, Price EP
• Koala Retrovirus in Northern Australia Shows a Mixture of Stable Endogenization and Exogenous Lineage Diversification within Fragmented Koala Populations.
  Journal of virology 2021 Quigley BL, Melzer A, Ellis W, Tzipori G, Nilsson K, Olagoke O, Robbins A, Hanger J, Timms P
• Koalas vaccinated against Koala retrovirus respond by producing increased levels of interferon-gamma.
  Virology journal 2020 Olagoke O, Quigley BL, Timms P
• Therapeutic vaccination of koalas harbouring endogenous koala retrovirus (KoRV) improves antibody responses and reduces circulating viral load.
  NPJ vaccines 2020 Olagoke O, Quigley BL, Hemmatzadeh F, Tzipori G, Timms P
• Vaccination of koalas during antibiotic treatment for Chlamydia-induced cystitis induces an improved antibody response to Chlamydia pecorum.
  Scientific reports 2020 Phillips S, Quigley BL, Olagoke O, Booth R, Pyne M, Timms P
• Changes in Endogenous and Exogenous Koala Retrovirus Subtype Expression over Time Reflect Koala Health Outcomes.
  Journal of virology 2019 Quigley BL, Phillips S, Olagoke O, Robbins A, Hanger J, Timms P
• Prevalence and clinical significance of koala retrovirus in two South Australian koala (Phascolarctos cinereus) populations.
  Journal of medical microbiology 2019 Fabijan J, Miller D, Olagoke O, Woolford L, Boardman W, Timms P, Polkinghorne A, Simmons G, Hemmatzadeh F, Trott DJ, Speight KN