Saul Kato, PhD
Associate Professor
Neurology
School of Medicine
How does the brain produce flexible and effective behavior?
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Our lab develops and applies computational, cutting-edge engineering, and experimental approaches to basic and applied neuroscience and build theories of brain function. We also collaborate with other labs to apply our tools to probe brain dysfunction and disease.
The production of flexible but controlled behavioral sequences in simpler animals may be an evolutionary foundation for higher cognitive abilities in humans. I study how real-time function emerges from the nervous system of C. elegans, a 1 millimeter long roundworm. Despite having only 302 neurons, this animal has a rich behavioral repertoire including probabilistic and directed taxis, associative learning, cooperation, and coordinated body movement. I combine dynamical systems analysis with the development and application of high-throughput, high-resolution neural activity imaging technologies to understand how this "low-n" neural network processes sensory stimuli and integrates them with an evolving internal state in order to produce competent, continuous behavior.
On an entirely different evolutionary branch, organisms acquired the ability to harness large pools of largely undifferentiated neurons and shape them through development and learning in order to flexibly solve problems and drive complex tasks, thereby getting around the limited information capacity of the genome. I am also interested in understanding how these "high-n" neural systems achieve what they do, and determining what ingredients, or rules of assembly and operation, are required in order for such sophisticated problem-solving functions to emerge.
Awards
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- Alice and Alfred Werth Endowed Professorship in Neuroscience, UCSF, 2022
- Sloan Research Fellowship, Alfred P. Sloan Foundation, 2019-2020
Education & Training
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- PhD Neurobiology and Behavior Columbia University
- MS Electrical Engineering Stanford University
- BS Physics Stanford University
Websites
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- @@neurotheory on Twitter (twitter.com)
- Foundations of Cognition Laboratory (focolab.org)
- Weill Institute for Neurosciences (weill.ucsf.edu)
- Neuroscience Graduate Program (neurograd.ucsf.edu)
Grants and Projects
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- The Effect of Sleep on Neural Circuit Connections, NIH, 2014-2024
- Next-Generation Microscopic Imaging Platforms for Live Brain Imaging, Weill Neurohub, 2020-2023
- Emergence of Functional Network Dynamics from Single Cell Properties, NIH, 2017-2022
- Advanced Computational Methods for Understanding and Controlling Brain Dynamics, Weill Institute, 2019-2022
- Long term high speed and magnification imaging of 3D migrations – cells and nematodes, Program for Breakthrough Biomedical Research, 2017-2018
- Dissecting whole brain neuronal network dynamics, Program for Breakthrough Biomedical Research, 2017-2018
Publications (16)
Top publication keywords:
Motor NeuronsSensory Receptor CellsModels, BiologicalCell BodyMicroscopyOdorantsSmellBehavior, AnimalRibosomesCalciumChemoreceptor CellsNonlinear DynamicsCaenorhabditis elegansNervous System Physiological PhenomenaOlfactory Pathways
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Sleep is required to consolidate odor memory and remodel olfactory synapses.
Cell 2023 Chandra R, Farah F, Muñoz-Lobato F, Bokka A, Benedetti KL, Brueggemann C, Saifuddin MFA, Miller JM, Li J, Chang E, Varshney A, Jimenez V, Baradwaj A, Nassif C, Alladin S, Andersen K, Garcia AJ, Bi V, … -
Neuroimmune cortical organoids overexpressing C4A exhibit multiple schizophrenia endophenotypes
bioRxiv 2023 Stanton M, Modan S, Taylor P, Hariani H, Sorokin J, Rash B, Rao S, Lopez-Tobon A, Enriquez L, Dang B, Owango D, O'Neill S, Castrillo C, Nicola J, Ye K, Blattner, R, Gonzalez F, Antonio D, Ramkumar P, … -
Implicitization of biquadratic Bézier triangle and quadrilateral surfaces
arXiv 2023 Borchardt J and Kato S -
A set of hub neurons and non-local connectivity features support global brain dynamics in C. elegans.
Current biology : CB 2022 Uzel K, Kato S, Zimmer M -
Hierarchical confounder discovery in the experiment-machine learning cycle
Cell Patterns 2022 Rogozhnikov A, Ramkumar P, Bedi R, Kato S, Escola GS.
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Information theory rules out the reflex-chain model of C. elegans locomotion
biorxiv 2022 Webb J and Kato S -
Demuxalot: scaled up genetic demultiplexing for single-cell sequencing
bioRxiv 2021 Rogozhnikov A, Ramkumar P, Shah K, Bedi R, Kato S, Escola GS -
minimo: a linked data and metadata storage system for small labs
Journal of Open Source Software 2021 Borchardt J, Dunn R, and Kato S -
Pycro-Manager: open-source software for customized and reproducible microscope control.
Nature methods 2021 Pinkard H, Stuurman N, Ivanov IE, Anthony NM, Ouyang W, Li B, Yang B, Tsuchida MA, Chhun B, Zhang G, Mei R, Anderson M, Shepherd DP, Hunt-Isaak I, Dunn RL, Jahr W, Kato S, Royer LA, Thiagarajah JR, … -
Optimization and scaling of patient-derived brain organoids uncovers deep phenotypes of disease
bioRxiv 2020 Shah K, Bedi R, Ramkumar P, Tong Z, Rash B, Stanton B, Sorokin J, Apaydin C, Batarse A, Bergamaschi J, Blattner R, Brown S, Bosshardt A, Castrillo C, Dang B, Drusinksy S, Enriquez L, Grayson D, … -
Soma-Targeted Imaging of Neural Circuits by Ribosome Tethering.
Neuron 2020 Chen Y, Jang H, Spratt PWE, Kosar S, Taylor DE, Essner RA, Bai L, Leib DE, Kuo TW, Lin YC, Patel M, Subkhangulova A, Kato S, Feinberg EH, Bender KJ, Knight ZA, Garrison JL -
Regulation of two motor patterns enables the gradual adjustment of locomotion strategy in Caenorhabditis elegans.
eLife 2016 Hums I, Riedl J, Mende F, Kato S, Kaplan HS, Latham R, Sonntag M, Traunmüller L, Zimmer M -
Global brain dynamics embed the motor command sequence of Caenorhabditis elegans.
Cell 2015 Kato S, Kaplan HS, Schrödel T, Skora S, Lindsay TH, Yemini E, Lockery S, Zimmer M -
Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy.
Nature methods 2014 Prevedel R, Yoon YG, Hoffmann M, Pak N, Wetzstein G, Kato S, Schrödel T, Raskar R, Zimmer M, Boyden ES, Vaziri A -
Temporal responses of C. elegans chemosensory neurons are preserved in behavioral dynamics.
Neuron 2014 Kato S, Xu Y, Cho CE, Abbott LF, Bargmann CI -
Neuropeptide feedback modifies odor-evoked dynamics in Caenorhabditis elegans olfactory neurons.
Nature neuroscience 2010 Chalasani SH, Kato S, Albrecht DR, Nakagawa T, Abbott LF, Bargmann CI