Ravi Patel, PhD
Sr. Bio. Data Scientist
Vice Chanc Research
Chancellor/EVC/FAS

Education & Training

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• PhD Genetics, Genomics & Development Cornell University 01/2020

Publications (18)

Top publication keywords:
3' Untranslated RegionsBasophilsGenes, PlantCyclin-Dependent Kinase 2CicerGene Expression ProfilingTranscription FactorsGene Regulatory NetworksTechnologyMicroRNAs5' Untranslated RegionsCyclonic StormsSequence AnalysisComputational BiologySpermatogonia

• Single-cell and spatial multi-omics highlight effects of anti-integrin therapy across cellular compartments in ulcerative colitis.
  Nature communications 2024 Mennillo E, Kim YJ, Lee G, Rusu I, Patel RK, Dorman LC, Flynn E, Li S, Bain JL, Andersen C, Rao A, Tamaki S, Tsui J, Shen A, Lotstein ML, Rahim M, Naser M, Bernard-Vazquez F, Eckalbar W, Cho SJ, Beck …
• Cyclone: an accessible pipeline to analyze, evaluate, and optimize multiparametric cytometry data.
  Frontiers in immunology 2023 Patel RK, Jaszczak RG, Im K, Carey ND, Courau T, Bunis DG, Samad B, Avanesyan L, Chew NW, Stenske S, Jespersen JM, Publicover J, Edwards AW, Naser M, Rao AA, Lupin-Jimenez L, Krummel MF, Cooper S, …
• Distinct pulmonary and systemic effects of dexamethasone in severe COVID-19.
  Research square 2023 Neyton LPA, Patel RK, Sarma A, UCSF COMET Consortium, Willmore A, Haller SC, Kangelaris KN, Eckalbar WL, Erle DJ, Krummel MF, Hendrickson CM, Woodruff PG, Langelier CR, Calfee CS, Fragiadakis GK
• Inhibition of MET Signaling with Ficlatuzumab in Combination with Chemotherapy in Refractory AML: Clinical Outcomes and High-Dimensional Analysis.
  Blood cancer discovery 2021 Wang VE, Blaser BW, Patel RK, Behbehani GK, Rao AA, Durbin-Johnson B, Jiang T, Logan AC, Settles M, Mannis GN, Olin R, Damon LE, Martin TG, Sayre PH, Gaensler KM, McMahon E, Flanders M, Weinberg V, Ye…
• Robust partitioning of microRNA targets from downstream regulatory changes.
  Nucleic acids research 2020 Patel RK, West JD, Jiang Y, Fogarty EA, Grimson A

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• CDK2 kinase activity is a regulator of male germ cell fate.
  Development (Cambridge, England) 2019 Singh P, Patel RK, Palmer N, Grenier JK, Paduch D, Kaldis P, Grimson A, Schimenti JC
• The Notch signaling pathway promotes basophil responses during helminth-induced type 2 inflammation.
  The Journal of experimental medicine 2019 Webb LM, Oyesola OO, Früh SP, Kamynina E, Still KM, Patel RK, Peng SA, Cubitt RL, Grimson A, Grenier JK, Harris TH, Danko CG, Tait Wojno ED
• MiR-146a wild-type 3' sequence identity is dispensable for proper innate immune function in vivo.
  Life science alliance 2019 Bertolet G, Kongchan N, Miller R, Patel RK, Jain A, Choi JM, Saltzman AB, Christenson A, Jung SY, Malovannaya A, Grimson A, Neilson JR
• Developmental Origin Governs CD8+ T Cell Fate Decisions during Infection.
  Cell 2018 Smith NL, Patel RK, Reynaldi A, Grenier JK, Wang J, Watson NB, Nzingha K, Yee Mon KJ, Peng SA, Grimson A, Davenport MP, Rudd BD
• Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression.
  Plant physiology 2018 Johnson C, Conrad LJ, Patel R, Anderson S, Li C, Pereira A, Sundaresan V
• Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq).
  Nature protocols 2016 Mahat DB, Kwak H, Booth GT, Jonkers IH, Danko CG, Patel RK, Waters CT, Munson K, Core LJ, Lis JT
• A widespread sequence-specific mRNA decay pathway mediated by hnRNPs A1 and A2/B1.
  Genes & development 2016 Geissler R, Simkin A, Floss D, Patel R, Fogarty EA, Scheller J, Grimson A
• CTDB: An Integrated Chickpea Transcriptome Database for Functional and Applied Genomics.
  PloS one 2015 Verma M, Kumar V, Patel RK, Garg R, Jain M
• A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.).
  The Plant journal : for cell and molecular biology 2013 Jain M, Misra G, Patel RK, Priya P, Jhanwar S, Khan AW, Shah N, Singh VK, Garg R, Jeena G, Yadav M, Kant C, Sharma P, Yadav G, Bhatia S, Tyagi AK, Chattopadhyay D
• NGS QC Toolkit: a toolkit for quality control of next generation sequencing data.
  PloS one 2012 Patel RK, Jain M
• PlantRGS: a web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants.
  DNA research : an international journal for rapid publication of reports on genes and genomes 2011 Patel RK, Jain M
• Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development.
  Plant physiology 2011 Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK, Jain M
• De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification.
  DNA research : an international journal for rapid publication of reports on genes and genomes 2011 Garg R, Patel RK, Tyagi AK, Jain M