Nilanjana Chatterjee, PhD
Asst. Professional Researcher
Medicine
School of Medicine

Publications (117)

Top publication keywords:
Genetic Predisposition to DiseaseNucleosomesGenetic PleiotropyLung NeoplasmsMendelian Randomization AnalysisGallbladder NeoplasmsGene-Environment InteractionBreast NeoplasmsBivalviaModels, GeneticMultifactorial InheritancePopulation HealthQuantitative Trait LociGenome-Wide Association StudyPolymorphism, Single Nucleotide

• Genetic and Cellular Architecture of Breast Cancer Risk in Multi-Ancestry Studies of 159,297 Cases and 212,102 Controls.
  medRxiv : the preprint server for health sciences 2025 Li JL, Zanti M, Williams J, Jahagirdar O, Jia G, Turcan A, Hu Q, Brandenburg JT, Yan L, Ho WK, Li J, Miranda JP, Godbole D, Dias JA, Zhang X, Dorling L, Chen WC, Boddicker N, Wang Y, Martin A, Zhang …
• Discovering plasma proteins associated with breast cancer incidence in postmenopausal women in the Atherosclerosis Risk in Communities study.
  Journal of the National Cancer Institute 2025 Syleouni ME, Joshu CE, Coresh J, Gunter MJ, Butler KR, Couper DJ, Guevara M, Lu J, Prizment A, Riboli E, Ru M, Mahamat Saleh Y, Smith-Byrne K, Soori M, Visvanathan K, Burk VA, Wang Z, Chatterjee N, …
• DiscoDivas: Leveraging genetic ancestry continuum information to interpolate PRS for admixed populations.
  medRxiv : the preprint server for health sciences 2025 Ruan Y, Bhukar R, Patel A, Koyama S, Hull L, Truong B, Cho SM, Hornsby W, Zhang H, Chatterjee N, Natarajan P
• Perceived and observed biases within scientific communities: a case study in movement ecology.
  Proceedings. Biological sciences 2025 Shaw AK, Fouda L, Mezzini S, Kim D, Chatterjee N, Wolfson D, Abrahms B, Attias N, Beardsworth CE, Beltran RS, Binning SA, Blincow KM, Chan YC, Fronhofer EA, Hegemann A, Hurme ER, Iannarilli F, Kellner…
• Germline genetic variation impacts clonal hematopoiesis landscape and progression to malignancy.
  Nature genetics 2025 Liu J, Tran D, Xue L, Wiley BJ, Vlasschaert C, Watson CJ, MacGregor HAJ, Zong X, Chan ICC, Das I, Uddin MM, Niroula A, Griffin G, Ebert BL, Mack T, Pershad Y, Sharber B, Berger M, Zehir A, Ptashkin R,…

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• Expanding scope of genetic studies in the era of biobanks.
  Human molecular genetics 2025 Dutta D, Chatterjee N
• Correlations Within and Between Highly Multiplexed Proteomic Assays of Human Plasma.
  Clinical chemistry 2025 Rooney MR, Chen J, Ballantyne CM, Hoogeveen RC, Boerwinkle E, Yu B, Walker KA, Schlosser P, Selvin E, Chatterjee N, Couper D, Grams ME, Coresh J
• Polygenic Risk Score and Lung Adenocarcinoma Risk Among Never-Smokers by EGFR Mutation Status: A Brief Report.
  Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2024 Blechter B, Hsiung CA, Wang X, Zhang H, Seow WJ, Shi J, Chatterjee N, Kim HN, Wong MP, Hong YC, Wong JYY, Dai J, Hosgood HD, Wang Z, Chang IS, Choi J, Wang J, Song M, Hu W, Zheng W, Kim JH, Zhou B, …
• Polygenic Risk Scores and Extreme Coronary Artery Calcium Phenotypes (CAC=0 and CAC≥1000) in Adults ≥75 Years Old: The ARIC Study.
  Circulation. Cardiovascular imaging 2024 Dzaye O, Razavi AC, Dardari ZA, Wang FM, Honda Y, Nasir K, Coresh J, Howard-Claudio CM, Jin J, Yu B, de Vries PS, Wagenknecht L, Folsom AR, Blankstein R, Kelly TN, Whelton SP, Mortensen MB, Wang Z, …
• Mendelian randomization analysis using multiple biomarkers of an underlying common exposure.
  Biostatistics (Oxford, England) 2024 Jin J, Qi G, Yu Z, Chatterjee N
• Characterizing Common and Rare Variations in Nontraditional Glycemic Biomarkers Using Multivariate Approaches on Multiancestry ARIC Study.
  Diabetes 2024 Ray D, Loomis SJ, Venkataraghavan S, Zhang J, Tin A, Yu B, Chatterjee N, Selvin E, Duggal P
• Validation of candidate protein biomarkers previously identified by genetic instruments for prostate cancer risk: A prospective cohort analysis of directly measured protein levels in the ARIC study.
  The Prostate 2024 Liu T, Joshu CE, Lu J, Prizment A, Chatterjee N, Wu L, Platz EA
• Genome-wide large-scale multi-trait analysis characterizes global patterns of pleiotropy and unique trait-specific variants.
  Nature communications 2024 Qi G, Chhetri SB, Ray D, Dutta D, Battle A, Bhattacharjee S, Chatterjee N
• Plasma proteomic comparisons change as coverage expands for SomaLogic and Olink.
  medRxiv : the preprint server for health sciences 2024 Rooney MR, Chen J, Ballantyne CM, Hoogeveen RC, Boerwinkle E, Yu B, Walker KA, Schlosser P, Selvin E, Chatterjee N, Couper D, Grams ME, Coresh J
• Wasm-iCARE: a portable and privacy-preserving web module to build, validate, and apply absolute risk models.
  JAMIA open 2024 Balasubramanian JB, Choudhury PP, Mukhopadhyay S, Ahearn T, Chatterjee N, García-Closas M, Almeida JS
• MUSSEL: Enhanced Bayesian polygenic risk prediction leveraging information across multiple ancestry groups.
  Cell genomics 2024 Jin J, Zhan J, Zhang J, Zhao R, O'Connell J, Jiang Y, 23andMe Research Team, Buyske S, Gignoux C, Haiman C, Kenny EE, Kooperberg C, North K, Koelsch BL, Wojcik G, Zhang H, Chatterjee N
• Subset-based method for cross-tissue transcriptome-wide association studies improves power and interpretability.
  HGG advances 2024 Guo X, Chatterjee N, Dutta D
• Analytical challenges in omics research on asthma and allergy: A National Institute of Allergy and Infectious Diseases workshop.
  The Journal of allergy and clinical immunology 2024 Bunyavanich S, Becker PM, Altman MC, Lasky-Su J, Ober C, Zengler K, Berdyshev E, Bonneau R, Chatila T, Chatterjee N, Chung KF, Cutcliffe C, Davidson W, Dong G, Fang G, Fulkerson P, Himes BE, Liang L, …
• A new method for multiancestry polygenic prediction improves performance across diverse populations.
  Nature genetics 2023 Zhang H, Zhan J, Jin J, Zhang J, Lu W, Zhao R, Ahearn TU, Yu Z, O'Connell J, Jiang Y, Chen T, Okuhara D, 23andMe Research Team, Garcia-Closas M, Lin X, Koelsch BL, Chatterjee N
• MUSSEL: Enhanced Bayesian Polygenic Risk Prediction Leveraging Information across Multiple Ancestry Groups.
  bioRxiv : the preprint server for biology 2023 Jin J, Zhan J, Zhang J, Zhao R, O'Connell J, Jiang Y, 23andMe Research Team, Buyske S, Gignoux C, Haiman C, Kenny EE, Kooperberg C, North K, Koelsch BL, Wojcik G, Zhang H, Chatterjee N
• Principles and methods for transferring polygenic risk scores across global populations.
  Nature reviews. Genetics 2023 Kachuri L, Chatterjee N, Hirbo J, Schaid DJ, Martin I, Kullo IJ, Kenny EE, Pasaniuc B, Polygenic Risk Methods in Diverse Populations (PRIMED) Consortium Methods Working Group, Witte JS, Ge T
• Transcriptome- and proteome-wide association studies nominate determinants of kidney function and damage.
  Genome biology 2023 Schlosser P, Zhang J, Liu H, Surapaneni AL, Rhee EP, Arking DE, Yu B, Boerwinkle E, Welling PA, Chatterjee N, Susztak K, Coresh J, Grams ME
• External validation of genetically predicted protein biomarkers for pancreatic cancer risk using aptamer-based plasma levels: A prospective analysis in the Atherosclerosis Risk in Communities Study.
  International journal of cancer 2023 Liu T, Joshu CE, Lu J, Prizment A, Chatterjee N, Coresh J, Wu L, Platz EA
• Genome-wide association study of lung adenocarcinoma in East Asia and comparison with a European population.
  Nature communications 2023 Shi J, Shiraishi K, Choi J, Matsuo K, Chen TY, Dai J, Hung RJ, Chen K, Shu XO, Kim YT, Landi MT, Lin D, Zheng W, Yin Z, Zhou B, Song B, Wang J, Seow WJ, Song L, Chang IS, Hu W, Chien LH, Cai Q, Hong …
• Genome-wide Association Study of Bladder Cancer Reveals New Biological and Translational Insights.
  European urology 2023 Koutros S, Kiemeney LA, Pal Choudhury P, Milne RL, Lopez de Maturana E, Ye Y, Joseph V, Florez-Vargas O, Dyrskjøt L, Figueroa J, Dutta D, Giles GG, Hildebrandt MAT, Offit K, Kogevinas M, Weiderpass E,…
• Identification of Protein Biomarkers of the Dietary Approaches to Stop Hypertension Diet in Randomized Feeding Studies and Validation in an Observational Study.
  Journal of the American Heart Association 2023 Kim H, Lichtenstein AH, Ganz P, Du S, Tang O, Yu B, Chatterjee N, Appel LJ, Coresh J, Rebholz CM
• Plasma Protein Biomarkers of Healthy Dietary Patterns: Results from the Atherosclerosis Risk in Communities Study and the Framingham Heart Study.
  The Journal of nutrition 2022 Du S, Chen J, Kim H, Walker ME, Lichtenstein AH, Chatterjee N, Ganz P, Yu B, Vasan RS, Coresh J, Rebholz CM
• Distinct Reproductive Risk Profiles for Intrinsic-Like Breast Cancer Subtypes: Pooled Analysis of Population-Based Studies.
  Journal of the National Cancer Institute 2022 Jung AY, Ahearn TU, Behrens S, Middha P, Bolla MK, Wang Q, Arndt V, Aronson KJ, Augustinsson A, Beane Freeman LE, Becher H, Brenner H, Canzian F, Carey LA, CTS Consortium, Czene K, Eliassen AH, …
• Breast Cancer Risk in Women from Ghana Carrying Rare Germline Pathogenic Mutations.
  Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2022 Ahearn TU, Choudhury PP, Derkach A, Wiafe-Addai B, Awuah B, Yarney J, Edusei L, Titiloye N, Adjei E, Vanderpuye V, Aitpillah F, Dedey F, Oppong J, Osei-Bonsu EB, Duggan MA, Brinton LA, Allen J, …
• Deficiency of the splicing factor RBM10 limits EGFR inhibitor response in EGFR-mutant lung cancer.
  The Journal of clinical investigation 2022 Nanjo S, Wu W, Karachaliou N, Blakely CM, Suzuki J, Chou YT, Ali SM, Kerr DL, Olivas VR, Shue J, Rotow J, Mayekar MK, Haderk F, Chatterjee N, Urisman A, Yeo JC, Skanderup AJ, Tan AC, Tam WL, Arrieta O…
• Reproductive factors and gall-bladder cancer, and the effect of common genetic variants on these associations: a case-control study in India.
  International journal of epidemiology 2022 Mhatre S, Lacey B, Sherliker P, Chatterjee N, Rajaraman P, Goel M, Patkar S, Ostwal V, Patil P, Shrikhande SV, Chitkara G, Badwe R, Lewington S, Dikshit R
• Polygenic scores in biomedical research.
  Nature reviews. Genetics 2022 Kullo IJ, Lewis CM, Inouye M, Martin AR, Ripatti S, Chatterjee N
• Rare Genetic Variants Associated With Myocardial Fibrosis: Multi-Ethnic Study of Atherosclerosis.
  Frontiers in cardiovascular medicine 2022 Shabani M, Dutta D, Ambale-Venkatesh B, Post WS, Taylor KD, Rich SS, Wu CO, Pereira NL, Shah SJ, Chatterjee N, Rotter JI, Arking DE, Lima JAC
• Trans-ethnic genome-wide association study of blood metabolites in the Chronic Renal Insufficiency Cohort (CRIC) study.
  Kidney international 2022 Rhee EP, Surapaneni A, Zheng Z, Zhou L, Dutta D, Arking DE, Zhang J, Duong T, Chatterjee N, Luo S, Schlosser P, Mehta R, Waikar SS, Saraf SL, Kelly TN, Hamm LL, Rao PS, Mathew AV, Hsu CY, Parsa A, …
• Brahma safeguards canalization of cardiac mesoderm differentiation.
  Nature 2022 Hota SK, Rao KS, Blair AP, Khalilimeybodi A, Hu KM, Thomas R, So K, Kameswaran V, Xu J, Polacco BJ, Desai RV, Chatterjee N, Hsu A, Muncie JM, Blotnick AM, Winchester SAB, Weinberger LS, Hüttenhain R, …
• Common variants in breast cancer risk loci predispose to distinct tumor subtypes.
  Breast cancer research : BCR 2022 Ahearn TU, Zhang H, Michailidou K, Milne RL, Bolla MK, Dennis J, Dunning AM, Lush M, Wang Q, Andrulis IL, Anton-Culver H, Arndt V, Aronson KJ, Auer PL, Augustinsson A, Baten A, Becher H, Behrens S, …
• Interaction of Cigarette Smoking and Polygenic Risk Score on Reduced Lung Function.
  JAMA network open 2021 Kim W, Moll M, Qiao D, Hobbs BD, Shrine N, Sakornsakolpat P, Tobin MD, Dudbridge F, Wain LV, Ladd-Acosta C, Chatterjee N, Silverman EK, Cho MH, Beaty TH
• Polygenic Risk Scores for Kidney Function and Their Associations with Circulating Proteome, and Incident Kidney Diseases.
  Journal of the American Society of Nephrology : JASN 2021 Yu Z, Jin J, Tin A, Köttgen A, Yu B, Chen J, Surapaneni A, Zhou L, Ballantyne CM, Hoogeveen RC, Arking DE, Chatterjee N, Grams ME, Coresh J
• Utilizing patient information to identify subtype heterogeneity of cancer driver genes.
  Statistical methods in medical research 2021 Wu HH, Hua X, Shi J, Chatterjee N, Zhu B
• Proteins Associated with Risk of Kidney Function Decline in the General Population.
  Journal of the American Society of Nephrology : JASN 2021 Grams ME, Surapaneni A, Chen J, Zhou L, Yu Z, Dutta D, Welling PA, Chatterjee N, Zhang J, Arking DE, Chen TK, Rebholz CM, Yu B, Schlosser P, Rhee EP, Ballantyne CM, Boerwinkle E, Lutsey PL, Mosley T, …
• Large-scale plasma proteomic analysis identifies proteins and pathways associated with dementia risk.
  Nature aging 2021 Walker KA, Chen J, Zhang J, Fornage M, Yang Y, Zhou L, Grams ME, Tin A, Daya N, Hoogeveen RC, Wu A, Sullivan KJ, Ganz P, Zeger SL, Gudmundsson EF, Emilsson V, Launer LJ, Jennings LL, Gudnason V, …
• Kinase-mediated RAS signaling via membraneless cytoplasmic protein granules.
  Cell 2021 Tulpule A, Guan J, Neel DS, Allegakoen HR, Lin YP, Brown D, Chou YT, Heslin A, Chatterjee N, Perati S, Menon S, Nguyen TA, Debnath J, Ramirez AD, Shi X, Yang B, Feng S, Makhija S, Huang B, Bivona TG
• Prospective evaluation of a breast-cancer risk model integrating classical risk factors and polygenic risk in 15 cohorts from six countries.
  International journal of epidemiology 2021 Hurson AN, Pal Choudhury P, Gao C, Hüsing A, Eriksson M, Shi M, Jones ME, Evans DGR, Milne RL, Gaudet MM, Vachon CM, Chasman DI, Easton DF, Schmidt MK, Kraft P, Garcia-Closas M, Chatterjee N, B-CAST …
• Improving reporting standards for polygenic scores in risk prediction studies.
  Nature 2021 Wand H, Lambert SA, Tamburro C, Iacocca MA, O'Sullivan JW, Sillari C, Kullo IJ, Rowley R, Dron JS, Brockman D, Venner E, McCarthy MI, Antoniou AC, Easton DF, Hegele RA, Khera AV, Chatterjee N, …
• Combined Associations of a Polygenic Risk Score and Classical Risk Factors With Breast Cancer Risk.
  Journal of the National Cancer Institute 2021 Kapoor PM, Mavaddat N, Choudhury PP, Wilcox AN, Lindström S, Behrens S, Michailidou K, Dennis J, Bolla MK, Wang Q, Jung A, Abu-Ful Z, Ahearn T, Andrulis IL, Anton-Culver H, Arndt V, Aronson KJ, Auer …
• Smoking Modifies Pancreatic Cancer Risk Loci on 2q21.3.
  Cancer research 2021 Mocci E, Kundu P, Wheeler W, Arslan AA, Beane-Freeman LE, Bracci PM, Brennan P, Canzian F, Du M, Gallinger S, Giles GG, Goodman PJ, Kooperberg C, Le Marchand L, Neale RE, Shu XO, Visvanathan K, White …
• Assessing Lung Cancer Absolute Risk Trajectory Based on a Polygenic Risk Model.
  Cancer research 2021 Hung RJ, Warkentin MT, Brhane Y, Chatterjee N, Christiani DC, Landi MT, Caporaso NE, Liu G, Johansson M, Albanes D, Marchand LL, Tardon A, Rennert G, Bojesen SE, Chen C, Field JK, Kiemeney LA, Lazarus…
• Sub-multiplicative interaction between polygenic risk score and household coal use in relation to lung adenocarcinoma among never-smoking women in Asia.
  Environment international 2020 Blechter B, Wong JYY, Agnes Hsiung C, Hosgood HD, Yin Z, Shu XO, Zhang H, Shi J, Song L, Song M, Zheng W, Wang Z, Caporaso N, Burdette L, Yeager M, Berndt SI, Teresa Landi M, Chen CJ, Chang GC, Hsiao …
• The Role of Gallstones in Gallbladder Cancer in India: A Mendelian Randomization Study.
  Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2020 Mhatre S, Richmond RC, Chatterjee N, Rajaraman P, Wang Z, Zhang H, Badwe R, Goel M, Patkar S, Shrikhande SV, Patil PS, Davey Smith G, Relton CL, Dikshit RP
• Cancer therapy shapes the fitness landscape of clonal hematopoiesis.
  Nature genetics 2020 Bolton KL, Ptashkin RN, Gao T, Braunstein L, Devlin SM, Kelly D, Patel M, Berthon A, Syed A, Yabe M, Coombs CC, Caltabellotta NM, Walsh M, Offit K, Stadler Z, Mandelker D, Schulman J, Patel A, Philip …
• A penalized regression framework for building polygenic risk models based on summary statistics from genome-wide association studies and incorporating external information.
  Journal of the American Statistical Association 2020 Chen TH, Chatterjee N, Landi MT, Shi J
• A Transcriptome-Wide Association Study Identifies Novel Candidate Susceptibility Genes for Pancreatic Cancer.
  Journal of the National Cancer Institute 2020 Zhong J, Jermusyk A, Wu L, Hoskins JW, Collins I, Mocci E, Zhang M, Song L, Chung CC, Zhang T, Xiao W, Albanes D, Andreotti G, Arslan AA, Babic A, Bamlet WR, Beane-Freeman L, Berndt S, Borgida A, …
• Assessment of polygenic architecture and risk prediction based on common variants across fourteen cancers.
  Nature communications 2020 Zhang YD, Hurson AN, Zhang H, Choudhury PP, Easton DF, Milne RL, Simard J, Hall P, Michailidou K, Dennis J, Schmidt MK, Chang-Claude J, Gharahkhani P, Whiteman D, Campbell PT, Hoffmeister M, Jenkins M…
• Genome-Wide Gene-Diabetes and Gene-Obesity Interaction Scan in 8,255 Cases and 11,900 Controls from PanScan and PanC4 Consortia.
  Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2020 Tang H, Jiang L, Stolzenberg-Solomon RZ, Arslan AA, Beane Freeman LE, Bracci PM, Brennan P, Canzian F, Du M, Gallinger S, Giles GG, Goodman PJ, Kooperberg C, Le Marchand L, Neale RE, Shu XO, …
• A bidirectional Mendelian randomization study supports causal effects of kidney function on blood pressure.
  Kidney international 2020 Yu Z, Coresh J, Qi G, Grams M, Boerwinkle E, Snieder H, Teumer A, Pattaro C, Köttgen A, Chatterjee N, Tin A
• Genome-wide association study identifies 32 novel breast cancer susceptibility loci from overall and subtype-specific analyses.
  Nature genetics 2020 Zhang H, Ahearn TU, Lecarpentier J, Barnes D, Beesley J, Qi G, Jiang X, O'Mara TA, Zhao N, Bolla MK, Dunning AM, Dennis J, Wang Q, Ful ZA, Aittomäki K, Andrulis IL, Anton-Culver H, Arndt V, Aronson KJ…
• Mustard oil consumption, cooking method, diet and gallbladder cancer risk in high- and low-risk regions of India.
  International journal of cancer 2020 Mhatre S, Rajaraman P, Chatterjee N, Bray F, Goel M, Patkar S, Ostwal V, Patil P, Manjrekar A, Shrikhande SV, Badwe R, Dikshit R
• Genome-wide association and multi-omic analyses reveal ACTN2 as a gene linked to heart failure.
  Nature communications 2020 Arvanitis M, Tampakakis E, Zhang Y, Wang W, Auton A, 23andMe Research Team, Dutta D, Glavaris S, Keramati A, Chatterjee N, Chi NC, Ren B, Post WS, Battle A
• iCARE: An R package to build, validate and apply absolute risk models.
  PloS one 2020 Pal Choudhury P, Maas P, Wilcox A, Wheeler W, Brook M, Check D, Garcia-Closas M, Chatterjee N
• Genetically Determined Height and Risk of Non-hodgkin Lymphoma.
  Frontiers in oncology 2020 Moore A, Kane E, Wang Z, Panagiotou OA, Teras LR, Monnereau A, Wong Doo N, Machiela MJ, Skibola CF, Slager SL, Salles G, Camp NJ, Bracci PM, Nieters A, Vermeulen RCH, Vijai J, Smedby KE, Zhang Y, …
• Diesel exhaust and bladder cancer risk by pathologic stage and grade subtypes.
  Environment international 2019 Koutros S, Kogevinas M, Friesen MC, Stewart PA, Baris D, Karagas MR, Schwenn M, Johnson A, Monawar Hosain GM, Serra C, Tardon A, Carrato A, Garcia-Closas R, Moore LE, Nickerson ML, Hewitt SM, Lenz P, …
• Predicting Lung Cancer Occurrence in Never-Smoking Females in Asia: TNSF-SQ, a Prediction Model.
  Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2019 Chien LH, Chen CH, Chen TY, Chang GC, Tsai YH, Hsiao CF, Chen KY, Su WC, Wang WC, Huang MS, Chen YM, Chen CY, Liang SK, Chen CY, Wang CL, Lee MH, Chung RH, Tsai FY, Hu JW, Katki HA, Chatterjee N, …
• Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.
  Cell reports 2019 Chatterjee N, Pazarentzos E, Mayekar MK, Gui P, Allegakoen DV, Hrustanovic G, Olivas V, Lin L, Verschueren E, Johnson JR, Hofree M, Yan JJ, Newton BW, Dollen JV, Earnshaw CH, Flanagan J, Chan E, …
• Tuberculosis infection and lung adenocarcinoma: Mendelian randomization and pathway analysis of genome-wide association study data from never-smoking Asian women.
  Genomics 2019 Wong JYY, Zhang H, Hsiung CA, Shiraishi K, Yu K, Matsuo K, Wong MP, Hong YC, Wang J, Seow WJ, Wang Z, Song M, Kim HN, Chang IS, Chatterjee N, Hu W, Wu C, Mitsudomi T, Zheng W, Kim JH, Seow A, Caporaso…
• Correction: BOADICEA: a comprehensive breast cancer risk prediction model incorporating genetic and nongenetic risk factors.
  Genetics in medicine : official journal of the American College of Medical Genetics 2019 Lee A, Mavaddat N, Wilcox AN, Cunningham AP, Carver T, Hartley S, de Villiers CB, Izquierdo A, Simard J, Schmidt MK, Walter FM, Chatterjee N, Garcia-Closas M, Tischkowitz M, Pharoah P, Easton DF, …
• Joint association of mammographic density adjusted for age and body mass index and polygenic risk score with breast cancer risk.
  Breast cancer research : BCR 2019 Vachon CM, Scott CG, Tamimi RM, Thompson DJ, Fasching PA, Stone J, Southey MC, Winham S, Lindström S, Lilyquist J, Giles GG, Milne RL, MacInnis RJ, Baglietto L, Li J, Czene K, Bolla MK, Wang Q, Dennis…
• Proceedings of the fourth international molecular pathological epidemiology (MPE) meeting.
  Cancer causes & control : CCC 2019 Campbell PT, Ambrosone CB, Nishihara R, Aerts HJWL, Bondy M, Chatterjee N, Garcia-Closas M, Giannakis M, Golden JA, Heng YJ, Kip NS, Koshiol J, Liu XS, Lopes-Ramos CM, Mucci LA, Nowak JA, Phipps AI, …
• Polytherapy and Targeted Cancer Drug Resistance.
  Trends in cancer 2019 Chatterjee N, Bivona TG
• BOADICEA: a comprehensive breast cancer risk prediction model incorporating genetic and nongenetic risk factors.
  Genetics in medicine : official journal of the American College of Medical Genetics 2019 Lee A, Mavaddat N, Wilcox AN, Cunningham AP, Carver T, Hartley S, Babb de Villiers C, Izquierdo A, Simard J, Schmidt MK, Walter FM, Chatterjee N, Garcia-Closas M, Tischkowitz M, Pharoah P, Easton DF, …
• Differential Subcellular Localization Regulates Oncogenic Signaling by ROS1 Kinase Fusion Proteins.
  Cancer research 2018 Neel DS, Allegakoen DV, Olivas V, Mayekar MK, Hemmati G, Chatterjee N, Blakely CM, McCoach CE, Rotow JK, Le A, Karachaliou N, Rosell R, Riess JW, Nichols R, Doebele RC, Bivona TG
• Two high-risk susceptibility loci at 6p25.3 and 14q32.13 for Waldenström macroglobulinemia.
  Nature communications 2018 McMaster ML, Berndt SI, Zhang J, Slager SL, Li SA, Vajdic CM, Smedby KE, Yan H, Birmann BM, Brown EE, Smith A, Kleinstern G, Fansler MM, Mayr C, Zhu B, Chung CC, Park JH, Burdette L, Hicks BD, …
• Joint associations of a polygenic risk score and environmental risk factors for breast cancer in the Breast Cancer Association Consortium.
  International journal of epidemiology 2018 Rudolph A, Song M, Brook MN, Milne RL, Mavaddat N, Michailidou K, Bolla MK, Wang Q, Dennis J, Wilcox AN, Hopper JL, Southey MC, Keeman R, Fasching PA, Beckmann MW, Gago-Dominguez M, Castelao JE, …
• Etiology of hormone receptor positive breast cancer differs by levels of histologic grade and proliferation.
  International journal of cancer 2018 Abubakar M, Chang-Claude J, Ali HR, Chatterjee N, Coulson P, Daley F, Blows F, Benitez J, Milne RL, Brenner H, Stegmaier C, Mannermaa A, Rudolph A, Sinn P, Couch FJ, Devilee P, Tollenaar RAEM, …
• Integrating Clinical and Multiple Omics Data for Prognostic Assessment across Human Cancers.
  Scientific reports 2017 Zhu B, Song N, Shen R, Arora A, Machiela MJ, Song L, Landi MT, Ghosh D, Chatterjee N, Baladandayuthapani V, Zhao H
• Using imputed genotype data in the joint score tests for genetic association and gene-environment interactions in case-control studies.
  Genetic epidemiology 2017 Song M, Wheeler W, Caporaso NE, Landi MT, Chatterjee N
• Opportunities and Challenges for Environmental Exposure Assessment in Population-Based Studies.
  Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2017 Patel CJ, Kerr J, Thomas DC, Mukherjee B, Ritz B, Chatterjee N, Jankowska M, Madan J, Karagas MR, McAllister KA, Mechanic LE, Fallin MD, Ladd-Acosta C, Blair IA, Teitelbaum SL, Amos CI
• Characterising cis-regulatory variation in the transcriptome of histologically normal and tumour-derived pancreatic tissues.
  Gut 2017 Zhang M, Lykke-Andersen S, Zhu B, Xiao W, Hoskins JW, Zhang X, Rost LM, Collins I, Bunt MV, Jia J, Parikh H, Zhang T, Song L, Jermusyk A, Chung CC, Zhu B, Zhou W, Matters GL, Kurtz RC, Yeager M, …
• Common genetic variation and risk of gallbladder cancer in India: a case-control genome-wide association study.
  The Lancet. Oncology 2017 Mhatre S, Wang Z, Nagrani R, Badwe R, Chiplunkar S, Mittal B, Yadav S, Zhang H, Chung CC, Patil P, Chanock S, Dikshit R, Chatterjee N, Rajaraman P
• Association between GWAS-identified lung adenocarcinoma susceptibility loci and EGFR mutations in never-smoking Asian women, and comparison with findings from Western populations.
  Human molecular genetics 2017 Seow WJ, Matsuo K, Hsiung CA, Shiraishi K, Song M, Kim HN, Wong MP, Hong YC, Hosgood HD, Wang Z, Chang IS, Wang JC, Chatterjee N, Tucker M, Wei H, Mitsudomi T, Zheng W, Kim JH, Zhou B, Caporaso NE, …
• Winner's Curse Correction and Variable Thresholding Improve Performance of Polygenic Risk Modeling Based on Genome-Wide Association Study Summary-Level Data.
  PLoS genetics 2016 Shi J, Park JH, Duan J, Berndt ST, Moy W, Yu K, Song L, Wheeler W, Hua X, Silverman D, Garcia-Closas M, Hsiung CA, Figueroa JD, Cortessis VK, Malats N, Karagas MR, Vineis P, Chang IS, Lin D, Zhou B, …
• Association between breast cancer genetic susceptibility variants and terminal duct lobular unit involution of the breast.
  International journal of cancer 2016 Bodelon C, Oh H, Chatterjee N, Garcia-Closas M, Palakal M, Sherman ME, Pfeiffer RM, Geller B, Vacek P, Weaver DL, Chicoine R, Papathomas D, Xiang J, Patel DA, Khodr ZG, Linville L, Clare SE, Visscher …
• Breast Cancer Risk From Modifiable and Nonmodifiable Risk Factors Among White Women in the United States.
  JAMA oncology 2016 Maas P, Barrdahl M, Joshi AD, Auer PL, Gaudet MM, Milne RL, Schumacher FR, Anderson WF, Check D, Chattopadhyay S, Baglietto L, Berg CD, Chanock SJ, Cox DG, Figueroa JD, Gail MH, Graubard BI, Haiman CA…
• Telomere structure and maintenance gene variants and risk of five cancer types.
  International journal of cancer 2016 Karami S, Han Y, Pande M, Cheng I, Rudd J, Pierce BL, Nutter EL, Schumacher FR, Kote-Jarai Z, Lindstrom S, Witte JS, Fang S, Han J, Kraft P, Hunter DJ, Song F, Hung RJ, McKay J, Gruber SB, Chanock SJ,…
• Ages at menarche- and menopause-related genetic variants in relation to terminal duct lobular unit involution in normal breast tissue.
  Breast cancer research and treatment 2016 Oh H, Bodelon C, Palakal M, Chatterjee N, Sherman ME, Linville L, Geller BM, Vacek PM, Weaver DL, Chicoine RE, Papathomas D, Patel DA, Xiang J, Clare SE, Visscher DW, Mies C, Hewitt SM, Brinton LA, …
• Female chromosome X mosaicism is age-related and preferentially affects the inactivated X chromosome.
  Nature communications 2016 Machiela MJ, Zhou W, Karlins E, Sampson JN, Freedman ND, Yang Q, Hicks B, Dagnall C, Hautman C, Jacobs KB, Abnet CC, Aldrich MC, Amos C, Amundadottir LT, Arslan AA, Beane-Freeman LE, Berndt SI, Black …
• Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
  Cancer research 2016 Fehringer G, Kraft P, Pharoah PD, Eeles RA, Chatterjee N, Schumacher FR, Schildkraut JM, Lindström S, Brennan P, Bickeböller H, Houlston RS, Landi MT, Caporaso N, Risch A, Amin Al Olama A, Berndt SI, …
• Meta-analysis of genome-wide association studies discovers multiple loci for chronic lymphocytic leukemia.
  Nature communications 2016 Berndt SI, Camp NJ, Skibola CF, Vijai J, Wang Z, Gu J, Nieters A, Kelly RS, Smedby KE, Monnereau A, Cozen W, Cox A, Wang SS, Lan Q, Teras LR, Machado M, Yeager M, Brooks-Wilson AR, Hartge P, Purdue MP…
• SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells.
  eLife 2016 Myers SA, Peddada S, Chatterjee N, Friedrich T, Tomoda K, Krings G, Thomas S, Maynard J, Broeker M, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B
• Stepwise nucleosome translocation by RSC remodeling complexes.
  eLife 2016 Harada BT, Hwang WL, Deindl S, Chatterjee N, Bartholomew B, Zhuang X
• MEGSA: A Powerful and Flexible Framework for Analyzing Mutual Exclusivity of Tumor Mutations.
  American journal of human genetics 2016 Hua X, Hyland PL, Huang J, Song L, Zhu B, Caporaso NE, Landi MT, Chatterjee N, Shi J
• Identification of a novel susceptibility locus at 13q34 and refinement of the 20p12.2 region as a multi-signal locus associated with bladder cancer risk in individuals of European ancestry.
  Human molecular genetics 2016 Figueroa JD, Middlebrooks CD, Banday AR, Ye Y, Garcia-Closas M, Chatterjee N, Koutros S, Kiemeney LA, Rafnar T, Bishop T, Furberg H, Matullo G, Golka K, Gago-Dominguez M, Taylor JA, Fletcher T, Siddiq…
• Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women.
  Human molecular genetics 2016 Wang Z, Seow WJ, Shiraishi K, Hsiung CA, Matsuo K, Liu J, Chen K, Yamji T, Yang Y, Chang IS, Wu C, Hong YC, Burdett L, Wyatt K, Chung CC, Li SA, Yeager M, Hutchinson A, Hu W, Caporaso N, Landi MT, …
• Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.
  Molecular and cellular biology 2015 Chatterjee N, North JA, Dechassa ML, Manohar M, Prasad R, Luger K, Ottesen JJ, Poirier MG, Bartholomew B
• Modification of Occupational Exposures on Bladder Cancer Risk by Common Genetic Polymorphisms.
  Journal of the National Cancer Institute 2015 Figueroa JD, Koutros S, Colt JS, Kogevinas M, Garcia-Closas M, Real FX, Friesen MC, Baris D, Stewart P, Schwenn M, Johnson A, Karagas MR, Armenti KR, Moore LE, Schned A, Lenz P, Prokunina-Olsson L, …
• Further Confirmation of Germline Glioma Risk Variant rs78378222 in TP53 and Its Implication in Tumor Tissues via Integrative Analysis of TCGA Data.
  Human mutation 2015 Wang Z, Rajaraman P, Melin BS, Chung CC, Zhang W, McKean-Cowdin R, Michaud D, Yeager M, Ahlbom A, Albanes D, Andersson U, Freeman LE, Buring JE, Butler MA, Carreón T, Feychting M, Gapstur SM, Gaziano …
• Extranucleosomal DNA enhances the activity of the LSD1/CoREST histone demethylase complex.
  Nucleic acids research 2015 Kim SA, Chatterjee N, Jennings MJ, Bartholomew B, Tan S
• Characterization of large structural genetic mosaicism in human autosomes.
  American journal of human genetics 2015 Machiela MJ, Zhou W, Sampson JN, Dean MC, Jacobs KB, Black A, Brinton LA, Chang IS, Chen C, Chen C, Chen K, Cook LS, Crous Bou M, De Vivo I, Doherty J, Friedenreich CM, Gaudet MM, Haiman CA, Hankinson…
• Genetic variants associated with longer telomere length are associated with increased lung cancer risk among never-smoking women in Asia: a report from the female lung cancer consortium in Asia.
  International journal of cancer 2014 Machiela MJ, Hsiung CA, Shu XO, Seow WJ, Wang Z, Matsuo K, Hong YC, Seow A, Wu C, Hosgood HD, Chen K, Wang JC, Wen W, Cawthon R, Chatterjee N, Hu W, Caporaso NE, Park JY, Chen CJ, Kim YH, Kim YT, …
• The 19q12 bladder cancer GWAS signal: association with cyclin E function and aggressive disease.
  Cancer research 2014 Fu YP, Kohaar I, Moore LE, Lenz P, Figueroa JD, Tang W, Porter-Gill P, Chatterjee N, Scott-Johnson A, Garcia-Closas M, Muchmore B, Baris D, Paquin A, Ylaya K, Schwenn M, Apolo AB, Karagas MR, Tarway M…
• Genome-wide association study identifies multiple susceptibility loci for diffuse large B cell lymphoma.
  Nature genetics 2014 Cerhan JR, Berndt SI, Vijai J, Ghesquières H, McKay J, Wang SS, Wang Z, Yeager M, Conde L, de Bakker PI, Nieters A, Cox D, Burdett L, Monnereau A, Flowers CR, De Roos AJ, Brooks-Wilson AR, Lan Q, …
• Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33.
  Human molecular genetics 2014 Wang Z, Zhu B, Zhang M, Parikh H, Jia J, Chung CC, Sampson JN, Hoskins JW, Hutchinson A, Burdette L, Ibrahim A, Hautman C, Raj PS, Abnet CC, Adjei AA, Ahlbom A, Albanes D, Allen NE, Ambrosone CB, …
• Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer.
  Nature genetics 2014 Wang Y, McKay JD, Rafnar T, Wang Z, Timofeeva MN, Broderick P, Zong X, Laplana M, Wei Y, Han Y, Lloyd A, Delahaye-Sourdeix M, Chubb D, Gaborieau V, Wheeler W, Chatterjee N, Thorleifsson G, Sulem P, …
• Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue.
  Nature communications 2014 Shi J, Marconett CN, Duan J, Hyland PL, Li P, Wang Z, Wheeler W, Zhou B, Campan M, Lee DS, Huang J, Zhou W, Triche T, Amundadottir L, Warner A, Hutchinson A, Chen PH, Chung BS, Pesatori AC, Consonni D…
• Common genetic polymorphisms modify the effect of smoking on absolute risk of bladder cancer.
  Cancer research 2013 Garcia-Closas M, Rothman N, Figueroa JD, Prokunina-Olsson L, Han SS, Baris D, Jacobs EJ, Malats N, De Vivo I, Albanes D, Purdue MP, Sharma S, Fu YP, Kogevinas M, Wang Z, Tang W, Tardón A, Serra C, …
• Accurate estimation of nucleic acids by amplification efficiency dependent PCR.
  PloS one 2012 Chatterjee N, Banerjee T, Datta S
• Disparity in the DNA translocase domains of SWI/SNF and ISW2.
  Nucleic acids research 2012 Dechassa ML, Hota SK, Sen P, Chatterjee N, Prasad P, Bartholomew B
• Encyclopedia of Signaling Molecules Springer Press
  SWI/SNF Chromatin Remodeling Complex 2012 Sen P, Chatterjee N, and Bartholomew B
• Application of a novel score test for genetic association incorporating gene-gene interaction suggests functionality for prostate cancer susceptibility regions.
  Human heredity 2011 Ciampa J, Yeager M, Jacobs K, Thun MJ, Gapstur S, Albanes D, Virtamo J, Weinstein SJ, Giovannucci E, Willett WC, Cancel-Tassin G, Cussenot O, Valeri A, Hunter D, Hoover R, Thomas G, Chanock S, Holmes …
• Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms.
  Nucleic acids research 2011 Chatterjee N, Sinha D, Lemma-Dechassa M, Tan S, Shogren-Knaak MA, Bartholomew B
• Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling.
  Nucleic acids research 2011 North JA, Javaid S, Ferdinand MB, Chatterjee N, Picking JW, Shoffner M, Nakkula RJ, Bartholomew B, Ottesen JJ, Fishel R, Poirier MG
• Large-scale exploration of gene-gene interactions in prostate cancer using a multistage genome-wide association study.
  Cancer research 2011 Ciampa J, Yeager M, Amundadottir L, Jacobs K, Kraft P, Chung C, Wacholder S, Yu K, Wheeler W, Thun MJ, Divers WR, Gapstur S, Albanes D, Virtamo J, Weinstein S, Giovannucci E, Willett WC, Cancel-Tassin…
• SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes.
  Molecular cell 2010 Dechassa ML, Sabri A, Pondugula S, Kassabov SR, Chatterjee N, Kladde MP, Bartholomew B
• Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade.
  Cancer research 2010 Menashe I, Maeder D, Garcia-Closas M, Figueroa JD, Bhattacharjee S, Rotunno M, Kraft P, Hunter DJ, Chanock SJ, Rosenberg PS, Chatterjee N
• Xenobiotic metabolizing gene variants, dietary heterocyclic amine intake, and risk of prostate cancer.
  Cancer research 2009 Koutros S, Berndt SI, Sinha R, Ma X, Chatterjee N, Alavanja MC, Zheng T, Huang WY, Hayes RB, Cross AJ
• Handbook of Cell Signaling, Oxford-Academic Press
  The SWI/SNF and RSC Nucleosome Remodeling Complexes 2009 Chatterjee N, Sen P and Bartholomew B
• PTEN expression in endometrial biopsies as a marker of progression to endometrial carcinoma.
  Cancer research 2008 Lacey JV, Mutter GL, Ronnett BM, Ioffe OB, Duggan MA, Rush BB, Glass AG, Richesson DA, Chatterjee N, Langholz B, Sherman ME
• Common genetic variants in proinflammatory and other immunoregulatory genes and risk for non-Hodgkin lymphoma.
  Cancer research 2006 Wang SS, Cerhan JR, Hartge P, Davis S, Cozen W, Severson RK, Chatterjee N, Yeager M, Chanock SJ, Rothman N