Nilanjana Chatterjee, PhD
Assistant Researcher
Medicine
School of Medicine

Publications (28)

Top publication keywords:
Saccharomyces cerevisiaeBiomarkers, TumorGenome-Wide Association StudyTranscription FactorsNucleosomesHistonesDNA-Binding ProteinsCarcinoma in SituPTEN PhosphohydrolaseOncogene Proteins, FusionSaccharomyces cerevisiae ProteinsNeoplasmsReal-Time Polymerase Chain ReactionDrug Resistance, NeoplasmChromatin Assembly and Disassembly

• Deficiency of the splicing factor RBM10 limits EGFR inhibitor response in EGFR-mutant lung cancer.
  The Journal of clinical investigation 2022 Nanjo S, Wu W, Karachaliou N, Blakely CM, Suzuki J, Chou YT, Ali SM, Kerr DL, Olivas VR, Shue J, Rotow J, Mayekar MK, Haderk F, Chatterjee N, Urisman A, Yeo JC, Skanderup AJ, Tan AC, Tam WL, Arrieta O…
• Brahma safeguards canalization of cardiac mesoderm differentiation.
  Nature 2022 Hota SK, Rao KS, Blair AP, Khalilimeybodi A, Hu KM, Thomas R, So K, Kameswaran V, Xu J, Polacco BJ, Desai RV, Chatterjee N, Hsu A, Muncie JM, Blotnick AM, Winchester SAB, Weinberger LS, Hüttenhain R, …
• Kinase-mediated RAS signaling via membraneless cytoplasmic protein granules.
  Cell 2021 Tulpule A, Guan J, Neel DS, Allegakoen HR, Lin YP, Brown D, Chou YT, Heslin A, Chatterjee N, Perati S, Menon S, Nguyen TA, Debnath J, Ramirez AD, Shi X, Yang B, Feng S, Makhija S, Huang B, Bivona TG
• Smoking Modifies Pancreatic Cancer Risk Loci on 2q21.3.
  Cancer research 2021 Mocci E, Kundu P, Wheeler W, Arslan AA, Beane-Freeman LE, Bracci PM, Brennan P, Canzian F, Du M, Gallinger S, Giles GG, Goodman PJ, Kooperberg C, Le Marchand L, Neale RE, Shu XO, Visvanathan K, White …
• Assessing Lung Cancer Absolute Risk Trajectory Based on a Polygenic Risk Model.
  Cancer research 2021 Hung RJ, Warkentin MT, Brhane Y, Chatterjee N, Christiani DC, Landi MT, Caporaso NE, Liu G, Johansson M, Albanes D, Marchand LL, Tardon A, Rennert G, Bojesen SE, Chen C, Field JK, Kiemeney LA, Lazarus…

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• Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.
  Cell reports 2019 Chatterjee N, Pazarentzos E, Mayekar MK, Gui P, Allegakoen DV, Hrustanovic G, Olivas V, Lin L, Verschueren E, Johnson JR, Hofree M, Yan JJ, Newton BW, Dollen JV, Earnshaw CH, Flanagan J, Chan E, …
• Polytherapy and Targeted Cancer Drug Resistance.
  Trends in cancer 2019 Chatterjee N, Bivona TG
• Differential Subcellular Localization Regulates Oncogenic Signaling by ROS1 Kinase Fusion Proteins.
  Cancer research 2018 Neel DS, Allegakoen DV, Olivas V, Mayekar MK, Hemmati G, Chatterjee N, Blakely CM, McCoach CE, Rotow JK, Le A, Karachaliou N, Rosell R, Riess JW, Nichols R, Doebele RC, Bivona TG
• Cross-Cancer Genome-Wide Analysis of Lung, Ovary, Breast, Prostate, and Colorectal Cancer Reveals Novel Pleiotropic Associations.
  Cancer research 2016 Fehringer G, Kraft P, Pharoah PD, Eeles RA, Chatterjee N, Schumacher FR, Schildkraut JM, Lindström S, Brennan P, Bickeböller H, Houlston RS, Landi MT, Caporaso N, Risch A, Amin Al Olama A, Berndt SI, …
• SOX2 O-GlcNAcylation alters its protein-protein interactions and genomic occupancy to modulate gene expression in pluripotent cells.
  eLife 2016 Myers SA, Peddada S, Chatterjee N, Friedrich T, Tomoda K, Krings G, Thomas S, Maynard J, Broeker M, Thomson M, Pollard K, Yamanaka S, Burlingame AL, Panning B
• Stepwise nucleosome translocation by RSC remodeling complexes.
  eLife 2016 Harada BT, Hwang WL, Deindl S, Chatterjee N, Bartholomew B, Zhuang X
• MEGSA: A Powerful and Flexible Framework for Analyzing Mutual Exclusivity of Tumor Mutations.
  American journal of human genetics 2016 Hua X, Hyland PL, Huang J, Song L, Zhu B, Caporaso NE, Landi MT, Chatterjee N, Shi J
• Histone Acetylation near the Nucleosome Dyad Axis Enhances Nucleosome Disassembly by RSC and SWI/SNF.
  Molecular and cellular biology 2015 Chatterjee N, North JA, Dechassa ML, Manohar M, Prasad R, Luger K, Ottesen JJ, Poirier MG, Bartholomew B
• Extranucleosomal DNA enhances the activity of the LSD1/CoREST histone demethylase complex.
  Nucleic acids research 2015 Kim SA, Chatterjee N, Jennings MJ, Bartholomew B, Tan S
• The 19q12 bladder cancer GWAS signal: association with cyclin E function and aggressive disease.
  Cancer research 2014 Fu YP, Kohaar I, Moore LE, Lenz P, Figueroa JD, Tang W, Porter-Gill P, Chatterjee N, Scott-Johnson A, Garcia-Closas M, Muchmore B, Baris D, Paquin A, Ylaya K, Schwenn M, Apolo AB, Karagas MR, Tarway M…
• Common genetic polymorphisms modify the effect of smoking on absolute risk of bladder cancer.
  Cancer research 2013 Garcia-Closas M, Rothman N, Figueroa JD, Prokunina-Olsson L, Han SS, Baris D, Jacobs EJ, Malats N, De Vivo I, Albanes D, Purdue MP, Sharma S, Fu YP, Kogevinas M, Wang Z, Tang W, Tardón A, Serra C, …
• Accurate estimation of nucleic acids by amplification efficiency dependent PCR.
  PloS one 2012 Chatterjee N, Banerjee T, Datta S
• Disparity in the DNA translocase domains of SWI/SNF and ISW2.
  Nucleic acids research 2012 Dechassa ML, Hota SK, Sen P, Chatterjee N, Prasad P, Bartholomew B
• Encyclopedia of Signaling Molecules Springer Press
  SWI/SNF Chromatin Remodeling Complex 2012 Sen P, Chatterjee N, and Bartholomew B
• Histone H3 tail acetylation modulates ATP-dependent remodeling through multiple mechanisms.
  Nucleic acids research 2011 Chatterjee N, Sinha D, Lemma-Dechassa M, Tan S, Shogren-Knaak MA, Bartholomew B
• Phosphorylation of histone H3(T118) alters nucleosome dynamics and remodeling.
  Nucleic acids research 2011 North JA, Javaid S, Ferdinand MB, Chatterjee N, Picking JW, Shoffner M, Nakkula RJ, Bartholomew B, Ottesen JJ, Fishel R, Poirier MG
• Large-scale exploration of gene-gene interactions in prostate cancer using a multistage genome-wide association study.
  Cancer research 2011 Ciampa J, Yeager M, Amundadottir L, Jacobs K, Kraft P, Chung C, Wacholder S, Yu K, Wheeler W, Thun MJ, Divers WR, Gapstur S, Albanes D, Virtamo J, Weinstein S, Giovannucci E, Willett WC, Cancel-Tassin…
• SWI/SNF has intrinsic nucleosome disassembly activity that is dependent on adjacent nucleosomes.
  Molecular cell 2010 Dechassa ML, Sabri A, Pondugula S, Kassabov SR, Chatterjee N, Kladde MP, Bartholomew B
• Pathway analysis of breast cancer genome-wide association study highlights three pathways and one canonical signaling cascade.
  Cancer research 2010 Menashe I, Maeder D, Garcia-Closas M, Figueroa JD, Bhattacharjee S, Rotunno M, Kraft P, Hunter DJ, Chanock SJ, Rosenberg PS, Chatterjee N
• Xenobiotic metabolizing gene variants, dietary heterocyclic amine intake, and risk of prostate cancer.
  Cancer research 2009 Koutros S, Berndt SI, Sinha R, Ma X, Chatterjee N, Alavanja MC, Zheng T, Huang WY, Hayes RB, Cross AJ
• Handbook of Cell Signaling, Oxford-Academic Press
  The SWI/SNF and RSC Nucleosome Remodeling Complexes 2009 Chatterjee N, Sen P and Bartholomew B
• PTEN expression in endometrial biopsies as a marker of progression to endometrial carcinoma.
  Cancer research 2008 Lacey JV, Mutter GL, Ronnett BM, Ioffe OB, Duggan MA, Rush BB, Glass AG, Richesson DA, Chatterjee N, Langholz B, Sherman ME
• Common genetic variants in proinflammatory and other immunoregulatory genes and risk for non-Hodgkin lymphoma.
  Cancer research 2006 Wang SS, Cerhan JR, Hartge P, Davis S, Cozen W, Severson RK, Chatterjee N, Yeager M, Chanock SJ, Rothman N