Neelesh Soni, PhD
Postdoctoral Scholar
Bioengineering
School of Pharmacy

Publications (8)

Top publication keywords:
Molecular Docking SimulationNipah VirusComputer SimulationModels, MolecularRad51 Recombinasegag Gene Products, Human Immunodeficiency VirusMycobacterium smegmatisMutagenesis, InsertionalDNA, Single-StrandedMultiprotein ComplexesNucleoproteinsIntrinsically Disordered ProteinsProtein ConformationProteinsCrk-Associated Substrate Protein

• Methods for Molecular Modelling of Protein Complexes.
  Methods in molecular biology (Clifton, N.J.) 2021 Kanitkar TR, Sen N, Nair S, Soni N, Amritkar K, Ramtirtha Y, Madhusudhan MS
• Predicting and designing therapeutics against the Nipah virus.
  PLoS neglected tropical diseases 2019 Sen N, Kanitkar TR, Roy AA, Soni N, Amritkar K, Supekar S, Nair S, Singh G, Madhusudhan MS
• In silico methods for design of biological therapeutics.
  Methods (San Diego, Calif.) 2017 Roy A, Nair S, Sen N, Soni N, Madhusudhan MS
• Computational modeling of protein assemblies.
  Current opinion in structural biology 2017 Soni N, Madhusudhan MS
• High-resolution structure of the presynaptic RAD51 filament on single-stranded DNA by electron cryo-microscopy.
  Nucleic acids research 2016 Short JM, Liu Y, Chen S, Soni N, Madhusudhan MS, Shivji MK, Venkitaraman AR
• Molecular Mechanism Underlying ATP-Induced Conformational Changes in the Nucleoprotein Filament of Mycobacterium smegmatis RecA.
  Biochemistry 2016 Manjunath GP, Soni N, Vaddavalli PL, Shewale DJ, Madhusudhan MS, Muniyappa K
• Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients.
  AIDS (London, England) 2014 Neogi U, Rao SD, Bontell I, Verheyen J, Rao VR, Gore SC, Soni N, Shet A, Schülter E, Ekstrand ML, Wondwossen A, Kaiser R, Madhusudhan MS, Prasad VR, Sonnerborg A
• Biophysical properties of intrinsically disordered p130Cas substrate domain--implication in mechanosensing.
  PLoS computational biology 2014 Hotta K, Ranganathan S, Liu R, Wu F, Machiyama H, Gao R, Hirata H, Soni N, Ohe T, Hogue CW, Madhusudhan MS, Sawada Y