Matthew Settles
Bioinformatics Programmer 4
Biochemistry and Biophysics
School of Medicine

Publications (87)

Top publication keywords:
VaginaEndocrine DisruptorsMucous MembraneTriticumLactationMicroarray AnalysisAmphibiansChytridiomycotaIntrauterine Devices, MedicatedLactobacillusLevonorgestrelOligonucleotidesMyxococcus xanthusPeptide HydrolasesEncephalopathy, Bovine Spongiform

• clonevdjseq: A workflow and bioinformatics management system for sequencing, archiving, and analysis of VDJ sequences from clonal libraries.
  BMC bioinformatics 2025 Mitchell K, Hunter S, Froenicke L, Murray K, Settles M, Trimmer JS
• High-volume hybridoma sequencing on the NeuroMabSeq platform enables efficient generation of recombinant monoclonal antibodies and scFvs for neuroscience research.
  Scientific reports 2023 Mitchell KG, Gong B, Hunter SS, Burkart-Waco D, Gavira-O'Neill CE, Templeton KM, Goethel ME, Bzymek M, MacNiven LM, Murray KD, Settles ML, Froenicke L, Trimmer JS
• NeuroMabSeq: high volume acquisition, processing, and curation of hybridoma sequences and their use in generating recombinant monoclonal antibodies and scFvs for neuroscience research.
  bioRxiv : the preprint server for biology 2023 Mitchell KG, Gong B, Hunter SS, Burkart-Waco D, Gavira-O'Neill CE, Templeton KM, Goethel ME, Bzymek M, MacNiven LM, Murray KD, Settles ML, Froenicke L, Trimmer JS
• Human soft tissue sarcomas harbor an intratumoral viral microbiome which is linked with natural killer cell infiltrate and prognosis.
  Journal for immunotherapy of cancer 2023 Perry LM, Cruz SM, Kleber KT, Judge SJ, Darrow MA, Jones LB, Basmaci UN, Joshi N, Settles ML, Durbin-Johnson BP, Gingrich AA, Monjazeb AM, Carr-Ascher J, Thorpe SW, Murphy WJ, Eisen JA, Canter RJ
• Workshop-based learning and networking: a scalable model for research capacity strengthening in low- and middle-income countries.
  Global health action 2022 Perier C, Nasinghe E, Charles I, Ssetaba LJ, Ahyong V, Bangs D, Beatty PR, Czudnochowski N, Diallo A, Dugan E, Fabius JM, Fong Baker H, Gardner J, Isaacs S, Joanah B, Kalantar K, Kateete D, Knight M, …

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• Biofilms preserve the transmissibility of a multi-drug resistance plasmid.
  NPJ biofilms and microbiomes 2022 Metzger GA, Ridenhour BJ, France M, Gliniewicz K, Millstein J, Settles ML, Forney LJ, Stalder T, Top EM
• A two-stage digestion of whole murine knee joints for single-cell RNA sequencing.
  Osteoarthritis and cartilage open 2022 Leale DM, Li L, Settles ML, Mitchell K, Froenicke L, Yik JHN, Haudenschild DR
• Comparative Transcriptional Analyses in the Nucleus Accumbens Identifies RGS2 as a Key Mediator of Depression-Related Behavior.
  Biological psychiatry 2022 Williams AV, Peña CJ, Ramos-Maciel S, Laman-Maharg A, Ordoñez-Sanchez E, Britton M, Durbin-Johnson B, Settles M, Hao R, Yokoyama S, Xu C, Luo PX, Dwyer T, Bhela S, Black AM, Labonté B, Serafini RA, …
• Effects of pairing on color change and central gene expression in lined seahorses.
  Genes, brain, and behavior 2022 Mederos SL, Duarte RC, Mastoras M, Dennis MY, Settles ML, Lau AR, Scott A, Woodward K, Johnson C, Seelke AMH, Bales KL
• Sex disparate gut microbiome and metabolome perturbations precede disease progression in a mouse model of Rett syndrome.
  Communications biology 2021 Neier K, Grant TE, Palmer RL, Chappell D, Hakam SM, Yasui KM, Rolston M, Settles ML, Hunter SS, Madany A, Ashwood P, Durbin-Johnson B, LaSalle JM, Yasui DH
• Dual transcriptomic analysis reveals metabolic changes associated with differential persistence of human pathogenic bacteria in leaves of Arabidopsis and lettuce.
  G3 (Bethesda, Md.) 2021 Jacob C, Velásquez AC, Josh NA, Settles M, He SY, Melotto M
• Establishment of quantitative RNAi-based forward genetics in Entamoeba histolytica and identification of genes required for growth.
  PLoS pathogens 2021 Bettadapur A, Hunter SS, Suleiman RL, Ruyechan MC, Huang W, Barbieri CG, Miller HW, Tam TSY, Settles ML, Ralston KS
• Protective heterologous T cell immunity in COVID-19 induced by the trivalent MMR and Tdap vaccine antigens.
  Med (New York, N.Y.) 2021 Mysore V, Cullere X, Settles ML, Ji X, Kattan MW, Desjardins M, Durbin-Johnson B, Gilboa T, Baden LR, Walt DR, Lichtman AH, Jehi L, Mayadas TN
• Diversification, Introgression, and Rampant Cytonuclear Discordance in Rocky Mountains Chipmunks (Sciuridae: Tamias).
  Systematic biology 2021 Sarver BAJ, Herrera ND, Sneddon D, Hunter SS, Settles ML, Kronenberg Z, Demboski JR, Good JM, Sullivan J
• Inhibition of MET Signaling with Ficlatuzumab in Combination with Chemotherapy in Refractory AML: Clinical Outcomes and High-Dimensional Analysis.
  Blood cancer discovery 2021 Wang VE, Blaser BW, Patel RK, Behbehani GK, Rao AA, Durbin-Johnson B, Jiang T, Logan AC, Settles M, Mannis GN, Olin R, Damon LE, Martin TG, Sayre PH, Gaensler KM, McMahon E, Flanders M, Weinberg V, Ye…
• Wilson Disease: Intersecting DNA Methylation and Histone Acetylation Regulation of Gene Expression in a Mouse Model of Hepatic Copper Accumulation.
  Cellular and molecular gastroenterology and hepatology 2021 Sarode GV, Neier K, Shibata NM, Shen Y, Goncharov DA, Goncharova EA, Mazi TA, Joshi N, Settles ML, LaSalle JM, Medici V
• The auxin-producing Bacillus thuringiensis RZ2MS9 promotes the growth and modifies the root architecture of tomato (Solanum lycopersicum cv. Micro-Tom).
  Archives of microbiology 2021 Batista BD, Dourado MN, Figueredo EF, Hortencio RO, Marques JPR, Piotto FA, Bonatelli ML, Settles ML, Azevedo JL, Quecine MC
• Protective heterologous T cell immunity in COVID-19 induced by MMR and Tdap vaccine antigens.
  bioRxiv : the preprint server for biology 2021 Mysore V, Cullere X, Settles ML, Ji X, Kattan MW, Desjardins M, Durbin-Johnson B, Gilboa T, Baden LR, Walt DR, Lichtman A, Jehi L, Mayadas TN
• Disruption of global hypothalamic microRNA (miR) profiles and associated behavioral changes in California mice (Peromyscus californicus) developmentally exposed to endocrine disrupting chemicals.
  Hormones and behavior 2020 Kaur S, Kinkade JA, Green MT, Martin RE, Willemse TE, Bivens NJ, Schenk AK, Helferich WG, Trainor BC, Fass J, Settles M, Mao J, Rosenfeld CS
• Chromatin accessibility in canine stromal cells and its implications for canine somatic cell reprogramming.
  Stem cells translational medicine 2020 Questa M, Moshref M, Jimenez RJ, Lopez-Cervantes V, Crawford CK, Settles ML, Ross PJ, Kol A
• Association of the Lactase Persistence Haplotype Block With Disease Risk in Populations of European Descent.
  Frontiers in genetics 2020 Joslin SEK, Durbin-Johnson BP, Britton M, Settles ML, Korf I, Lemay DG
• Transcriptomic response to elevated water temperatures in adult migrating Yukon River Chinook salmon (Oncorhynchus tshawytscha).
  Conservation physiology 2020 Bowen L, von Biela VR, McCormick SD, Regish AM, Waters SC, Durbin-Johnson B, Britton M, Settles ML, Donnelly DS, Laske SM, Carey MP, Brown RJ, Zimmerman CE
• MYBPC3 Haplotype Linked to Hypertrophic Cardiomyopathy in Rhesus Macaques (Macaca mulatta).
  Comparative medicine 2020 Oldt RF, Bussey KJ, Settles ML, Fass JN, Roberts JA, Reader JR, Komandoor S, Abrich VA, Kanthaswamy S
• Complete Genome Sequence of Bacillus sp. Strain RZ2MS9, a Multitrait Plant Growth Promoter.
  Microbiology resource announcements 2020 Bonatelli ML, Li J, Dumaresq A, Quecine MC, Settles ML
• Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis Facilities.
  Journal of biomolecular techniques : JBT 2020 Dragon JA, Gates C, Sui SH, Hutchinson JN, Karuturi RKM, Kucukural A, Polson S, Riva A, Settles ML, Thimmapuram J, Levine SS
• Proximal femoral head transcriptome reveals novel candidate genes related to epiphysiolysis in broiler chickens.
  BMC genomics 2019 de Oliveira Peixoto J, Savoldi IR, Ibelli AMG, Cantão ME, Jaenisch FRF, Giachetto PF, Settles ML, Zanella R, Marchesi JAP, Pandolfi JR, Coutinho LL, Ledur MC
• Rectal Microbiome Composition Correlates with Humoral Immunity to HIV-1 in Vaccinated Rhesus Macaques.
  mSphere 2019 Elizaldi SR, Verma A, Walter KA, Rolston M, Dinasarapu AR, Durbin-Johnson BP, Settles M, Kozlowski PA, Raeman R, Iyer SS
• Single-Cell RNA-seq Reveals Profound Alterations in Mechanosensitive Dorsal Root Ganglion Neurons with Vitamin E Deficiency.
  iScience 2019 Finno CJ, Peterson J, Kang M, Park S, Bordbari MH, Durbin-Johnson B, Settles M, Perez-Flores MC, Lee JH, Yamoah EN
• Additional Evidence for DDB2 T338M as a Genetic Risk Factor for Ocular Squamous Cell Carcinoma in Horses.
  International journal of genomics 2019 Singer-Berk MH, Knickelbein KE, Lounsberry ZT, Crausaz M, Vig S, Joshi N, Britton M, Settles ML, Reilly CM, Bentley E, Nunnery C, Dwyer A, Lassaline ME, Bellone RR
• Ultrahigh-Throughput Multiplexing and Sequencing of >500-Base-Pair Amplicon Regions on the Illumina HiSeq 2500 Platform.
  mSystems 2019 Holm JB, Humphrys MS, Robinson CK, Settles ML, Ott S, Fu L, Yang H, Gajer P, He X, McComb E, Gravitt PE, Ghanem KG, Brotman RM, Ravel J
• Transcriptome Analysis of Salmonella Heidelberg after Exposure to Cetylpyridinium Chloride, Acidified Calcium Hypochlorite, and Peroxyacetic Acid.
  Journal of food protection 2019 Cadena M, Froenicke L, Britton M, Settles ML, Durbin-Johnson B, Kumimoto E, Gallardo RA, Ferreiro A, Chylkova T, Zhou H, Pitesky M
• Fatherhood alters gene expression within the MPOA.
  Environmental epigenetics 2018 Seelke AMH, Bond JM, Simmons TC, Joshi N, Settles ML, Stolzenberg D, Rhemtulla M, Bales KL
• Obesity treatment by epigallocatechin-3-gallate-regulated bile acid signaling and its enriched Akkermansia muciniphila.
  FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2018 Sheng L, Jena PK, Liu HX, Hu Y, Nagar N, Bronner DN, Settles ML, Bäumler AJ, Wan YY
• High-Quality Complete Genome Sequences of Three Bovine Shiga Toxin-Producing Escherichia coli O177:H- (fliCH25) Isolates Harboring Virulent stx2 and Multiple Plasmids.
  Genome announcements 2018 Sheng H, Duan M, Hunter SS, Minnich SA, Settles ML, New DD, Chase JR, Fagnan MW, Hovde CJ
• 16S rRNA analysis of diversity of manure microbial community in dairy farm environment.
  PloS one 2018 Pandey P, Chiu C, Miao M, Wang Y, Settles M, Del Rio NS, Castillo A, Souza A, Pereira R, Jeannotte R
• Human Milk Microbial Community Structure Is Relatively Stable and Related to Variations in Macronutrient and Micronutrient Intakes in Healthy Lactating Women.
  The Journal of nutrition 2017 Williams JE, Carrothers JM, Lackey KA, Beatty NF, York MA, Brooker SL, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK
• Unlocking the story in the swab: A new genotyping assay for the amphibian chytrid fungus Batrachochytrium dendrobatidis.
  Molecular ecology resources 2017 Byrne AQ, Rothstein AP, Poorten TJ, Erens J, Settles ML, Rosenblum EB
• Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
  Journal of biomolecular techniques : JBT 2017 Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, …
• Erratum to: Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus.
  Journal of molecular evolution 2017 Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL
• Small RNAs from a Big Genome: The piRNA Pathway and Transposable Elements in the Salamander Species Desmognathus fuscus.
  Journal of molecular evolution 2016 Madison-Villar MJ, Sun C, Lau NC, Settles ML, Mueller RL
• Love the one you're with: replicate viral adaptations converge on the same phenotypic change.
  PeerJ 2016 Miller CR, Nagel AC, Scott L, Settles M, Joyce P, Wichman HA
• A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae).
  PloS one 2016 Uribe-Convers S, Settles ML, Tank DC
• Full Mitochondrial Genome Sequence of the Sugar Beet Wireworm Limonius californicus (Coleoptera: Elateridae), a Common Agricultural Pest.
  Genome announcements 2016 Gerritsen AT, New DD, Robison BD, Rashed A, Hohenlohe P, Forney L, Rashidi M, Wilson CM, Settles ML
• Mitochondrial Genome Sequence of the Galápagos Endemic Land Snail Naesiotus nux.
  Genome announcements 2016 Hunter SS, Settles ML, New DD, Parent CE, Gerritsen AT
• Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance.
  Molecular biology and evolution 2015 Loftie-Eaton W, Yano H, Burleigh S, Simmons RS, Hughes JM, Rogers LM, Hunter SS, Settles ML, Forney LJ, Ponciano JM, Top EM
• The population genomics of rapid adaptation: disentangling signatures of selection and demography in white sands lizards.
  Molecular ecology 2015 Laurent S, Pfeifer SP, Settles ML, Hunter SS, Hardwick KM, Ormond L, Sousa VC, Jensen JD, Rosenblum EB
• Fecal Microbial Community Structure Is Stable over Time and Related to Variation in Macronutrient and Micronutrient Intakes in Lactating Women.
  The Journal of nutrition 2015 Carrothers JM, York MA, Brooker SL, Lackey KA, Williams JE, Shafii B, Price WJ, Settles ML, McGuire MA, McGuire MK
• Draft Genome Sequence of Pseudomonas sp. nov. H2.
  Genome announcements 2015 Loftie-Eaton W, Suzuki H, Bashford K, Heuer H, Stragier P, De Vos P, Settles ML, Top EM
• Vaginal microbiota of adolescent girls prior to the onset of menarche resemble those of reproductive-age women.
  mBio 2015 Hickey RJ, Zhou X, Settles ML, Erb J, Malone K, Hansmann MA, Shew ML, Van Der Pol B, Fortenberry JD, Forney LJ
• Fine-scale analysis of 16S rRNA sequences reveals a high level of taxonomic diversity among vaginal Atopobium spp.
  Pathogens and disease 2015 Mendes-Soares H, Krishnan V, Settles ML, Ravel J, Brown CJ, Forney LJ
• Elevated dairy fat intake in lactating women alters milk lipid and fatty acids without detectible changes in expression of genes related to lipid uptake or synthesis.
  Nutrition research (New York, N.Y.) 2015 Yahvah KM, Brooker SL, Williams JE, Settles M, McGuire MA, McGuire MK
• Comparative analysis of microbial community of novel lactic acid fermentation inoculated with different undefined mixed cultures.
  Bioresource technology 2014 Liang S, Gliniewicz K, Mendes-Soares H, Settles ML, Forney LJ, Coats ER, McDonald AG
• Influence of organic loading rate and solid retention time on polyhydroxybutyrate production from hybrid poplar hydrolysates using mixed microbial cultures.
  Bioresource technology 2014 Dai J, Gliniewicz K, Settles ML, Coats ER, McDonald AG
• Prenatal exposure to BPA alters the epigenome of the rat mammary gland and increases the propensity to neoplastic development.
  PloS one 2014 Dhimolea E, Wadia PR, Murray TJ, Settles ML, Treitman JD, Sonnenschein C, Shioda T, Soto AM
• Vaginal microbiome changes with levonorgestrel intrauterine system placement.
  Contraception 2014 Jacobson JC, Turok DK, Dermish AI, Nygaard IE, Settles ML
• Phase variation in Myxococcus xanthus yields cells specialized for iron sequestration.
  PloS one 2014 Dziewanowska K, Settles M, Hunter S, Linquist I, Schilkey F, Hartzell PL
• Maternal bisphenol a exposure impacts the fetal heart transcriptome.
  PloS one 2014 Chapalamadugu KC, Vandevoort CA, Settles ML, Robison BD, Murdoch GK
• Draft Genome Sequence of Pseudomonas moraviensis R28-S.
  Genome announcements 2014 Hunter SS, Yano H, Loftie-Eaton W, Hughes J, De Gelder L, Stragier P, De Vos P, Settles ML, Top EM
• Microbiota of the seminal fluid from healthy and infertile men.
  Fertility and sterility 2013 Hou D, Zhou X, Zhong X, Settles ML, Herring J, Wang L, Abdo Z, Forney LJ, Xu C
• SlopMap: a software application tool for quick and flexible identification of similar sequences using exact k-mer matching.
  Journal of data mining in genomics & proteomics 2013 Zhbannikov IY, Hunter SS, Settles ML, Foster JA
• Sex-specific transcriptional responses of the zebrafish (Danio rerio) brain selenoproteome to acute sodium selenite supplementation.
  Physiological genomics 2013 Benner MJ, Settles ML, Murdoch GK, Hardy RW, Robison BD
• MasABK proteins interact with proteins of the type IV pilin system to affect social motility of Myxococcus xanthus.
  PloS one 2013 Fremgen S, Williams A, Furusawa G, Dziewanowska K, Settles M, Hartzell P
• A forward genetic screen reveals that calcium-dependent protein kinase 3 regulates egress in Toxoplasma.
  PLoS pathogens 2012 Garrison E, Treeck M, Ehret E, Butz H, Garbuz T, Oswald BP, Settles M, Boothroyd J, Arrizabalaga G
• Substrate-specific gene expression in Batrachochytrium dendrobatidis, the chytrid pathogen of amphibians.
  PloS one 2012 Rosenblum EB, Poorten TJ, Joneson S, Settles M
• Epigenetic transgenerational inheritance of vinclozolin induced mouse adult onset disease and associated sperm epigenome biomarkers.
  Reproductive toxicology (Elmsford, N.Y.) 2012 Guerrero-Bosagna C, Covert TR, Haque MM, Settles M, Nilsson EE, Anway MD, Skinner MK
• An improved algorithm for the detection of genomic variation using short oligonucleotide expression microarrays.
  Molecular ecology resources 2012 Settles ML, Coram T, Soule T, Robison BD
• Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio).
  BMC genomics 2012 Drew RE, Settles ML, Churchill EJ, Williams SM, Balli S, Robison BD
• The role of clonal interference in the evolutionary dynamics of plasmid-host adaptation.
  mBio 2012 Hughes JM, Lohman BK, Deckert GE, Nichols EP, Settles M, Abdo Z, Top EM
• mcaGUI: microbial community analysis R-Graphical User Interface (GUI).
  Bioinformatics (Oxford, England) 2012 Copeland WK, Krishnan V, Beck D, Settles M, Foster JA, Cho KC, Day M, Hickey R, Schütte UM, Zhou X, Williams CJ, Forney LJ, Abdo Z
• Meta-analysis of two genome-wide association studies of bovine paratuberculosis.
  PloS one 2012 Minozzi G, Williams JL, Stella A, Strozzi F, Luini M, Settles ML, Taylor JF, Whitlock RH, Zanella R, Neibergs HL
• Only skin deep: shared genetic response to the deadly chytrid fungus in susceptible frog species.
  Molecular ecology 2012 Rosenblum EB, Poorten TJ, Settles M, Murdoch GK
• Experimental sink removal induces stress responses, including shifts in amino acid and phenylpropanoid metabolism, in soybean leaves.
  Planta 2011 Turner GW, Cuthbertson DJ, Voo SS, Settles ML, Grimes HD, Lange BM
• Genome-wide scan identifies loci associated with classical BSE occurrence.
  PloS one 2011 Murdoch BM, Murdoch GK, Settles M, McKay S, Williams JL, Moore SS
• Global analysis of phase variation in Myxococcus xanthus.
  Molecular microbiology 2011 Furusawa G, Dziewanowska K, Stone H, Settles M, Hartzell P
• OTUbase: an R infrastructure package for operational taxonomic unit data.
  Bioinformatics (Oxford, England) 2011 Beck D, Settles M, Foster JA
• Epigenetic transgenerational actions of vinclozolin on promoter regions of the sperm epigenome.
  PloS one 2010 Guerrero-Bosagna C, Settles M, Lucker B, Skinner MK
• PRNP haplotype associated with classical BSE incidence in European Holstein cattle.
  PloS one 2010 Murdoch BM, Clawson ML, Yue S, Basu U, McKay S, Settles M, Capoferri R, Laegreid WW, Williams JL, Moore SS
• GSEA-SNP identifies genes associated with Johne's disease in cattle.
  Mammalian genome : official journal of the International Mammalian Genome Society 2010 Neibergs HL, Settles ML, Whitlock RH, Taylor JF
• Alterations in the developing testis transcriptome following embryonic vinclozolin exposure.
  Reproductive toxicology (Elmsford, N.Y.) 2010 Clement TM, Savenkova MI, Settles M, Anway MD, Skinner MK
• A 2cM genome-wide scan of European Holstein cattle affected by classical BSE.
  BMC genetics 2010 Murdoch BM, Clawson ML, Laegreid WW, Stothard P, Settles M, McKay S, Prasad A, Wang Z, Moore SS, Williams JL
• Meta-analysis of transcripts associated with race-specific resistance to stripe rust in wheat demonstrates common induction of blue copper-binding protein, heat-stress transcription factor, pathogen-induced WIR1A protein, and ent-kaurene synthase transcripts.
  Functional & integrative genomics 2009 Coram TE, Huang X, Zhan G, Settles ML, Chen X
• Genome-wide transcriptional response of Silurana (Xenopus) tropicalis to infection with the deadly chytrid fungus.
  PloS one 2009 Rosenblum EB, Poorten TJ, Settles M, Murdoch GK, Robert J, Maddox N, Eisen MB
• Large-scale analysis of antisense transcription in wheat using the Affymetrix GeneChip Wheat Genome Array.
  BMC genomics 2009 Coram TE, Settles ML, Chen X
• Effect of starvation on transcriptomes of brain and liver in adult female zebrafish (Danio rerio).
  Physiological genomics 2008 Drew RE, Rodnick KJ, Settles M, Wacyk J, Churchill E, Powell MS, Hardy RW, Murdoch GK, Hill RA, Robison BD
• Transcriptome analysis of high-temperature adult-plant resistance conditioned by Yr39 during the wheat-Puccinia striiformis f. sp. tritici interaction.
  Molecular plant pathology 2008 Coram TE, Settles ML, Chen X
• Surveying expression level polymorphism and single-feature polymorphism in near-isogenic wheat lines differing for the Yr5 stripe rust resistance locus.
  TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2008 Coram TE, Settles ML, Wang M, Chen X
• Sexual dimorphism in hepatic gene expression and the response to dietary carbohydrate manipulation in the zebrafish (Danio rerio).
  Comparative biochemistry and physiology. Part D, Genomics & proteomics 2008 Robison BD, Drew RE, Murdoch GK, Powell M, Rodnick KJ, Settles M, Stone D, Churchill E, Hill RA, Papasani MR, Lewis SS, Hardy RW