Kyle Cromer, PhD
Assistant Professor
Surgery
School of Medicine
While we have long known the location of disease-causing mutations in the genome, the discovery of CRISPR finally gave us the ability to correct these typos back to what they should be in healthy patients.
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While this effort has yielded novel therapies in the clinic, in my own lab I want to look beyond simply correcting DNA typos and instead use genome editing to introduce novel functions into cells for therapeutic purposes. Examples include: -Engineering red blood cells to deliver novel protein payloads -Creating genome editing strategies that bias stem cell differentiation to produce clinically relevant cell types -Engineering kill switches to prevent differentiation into unwanted cell types -Developing novel ways to regulate therapeutic protein stability and expression using small molecules -Multiplexing editing in order to introduce multiple genome editing events simultaneously (such as correcting a disease-causing mutation and adding a kill switch that could be activated in the case of an adverse event)
With special focus on hematopoietic stem cells and red blood cells, my main goal is to close the gap between synthetic biologists and clinicians in order to address current bottlenecks in treating the hemoglobinopathies and other blood disorders. While this is my current focus, the tools I am developing are cell type- and disease-agnostic and I am always open to expanding these concepts into new areas.
Awards
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- Catalyst Award, UCSF Innovation Ventures, 2024-2025
- Mary Anne Koda-Kimble Award, UCSF School of Pharmacy, 2024-2025
- Junior Faculty Scholar Award, American Society of Hematology, 2023-2024
- New Frontier Research Award, UCSF Program for Breakthrough Biomedical Research, 2023-2024
- Career Development Award, American Society of Gene & Cell Therapy, 2022
- Honorary Mention, Prix Ars Electronica, 2021
- Star Mentor Award, Stanford Bio-X, 2021
Education & Training
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- Instructor Pediatrics Stanford University 05/2022
- Postdoc Pediatrics Stanford University 06/2020
- Postdoc Genetics Harvard Medical School 05/2016
- PhD Genetics Yale University 05/2014
Interests
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- AAV delivery
- Hematopoietic stem cells
- Cell engineering
- Human genetics
- Hematology
- CRISPR genome editing
- Protein engineering
Websites
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- Lab website (cromerlab.ucsf.edu)
Grants and Projects
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- Enrichment of erythroid cells using truncated EPO receptor, American Society of Hematology, 2023-2026
- Developing gene therapy strategies to correct a-thalassemia, NIH NHLBI, 2022-2025
- Developing base editor-mediated correction strategies for a-thalassemia, UCSF, 2023-2025
- Development of inducible signaling receptors to increase production of clinically relevant cell types, UCSF Program for Breakthrough Biomedical Research, 2023-2024
- Developing a CRISPR/AAV-mediated genome editing strategy to correct a-thalassemia, American Society of Gene & Cell Therapy, 2022
Publications (12)
Top publication keywords:
DependovirusGenetic Vectorsalpha-GlobinsParvovirinaeHematopoietic Stem CellsAntigens, CD34beta-ThalassemiaYY1 Transcription FactorInsulinomaGene EditingHemoglobinsCRISPR-Cas SystemsGenetic Therapybeta-GlobinsMicroarray Analysis
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Improving the safety of human pluripotent stem cell therapies using genome-edited orthogonal safeguards.
Nature communications 2020 Martin RM, Fowler JL, Cromer MK, Lesch BJ, Ponce E, Uchida N, Nishimura T, Porteus MH, Loh KM -
Highly Efficient and Marker-free Genome Editing of Human Pluripotent Stem Cells by CRISPR-Cas9 RNP and AAV6 Donor-Mediated Homologous Recombination.
Cell stem cell 2019 Martin RM, Ikeda K, Cromer MK, Uchida N, Nishimura T, Romano R, Tong AJ, Lemgart VT, Camarena J, Pavel-Dinu M, Sindhu C, Wiebking V, Vaidyanathan S, Dever DP, Bak RO, Laustsen A, Lesch BJ, Jakobsen MR… -
Global Transcriptional Response to CRISPR/Cas9-AAV6-Based Genome Editing in CD34+ Hematopoietic Stem and Progenitor Cells.
Molecular therapy : the journal of the American Society of Gene Therapy 2018 Cromer MK, Vaidyanathan S, Ryan DE, Curry B, Lucas AB, Camarena J, Kaushik M, Hay SR, Martin RM, Steinfeld I, Bak RO, Dever DP, Hendel A, Bruhn L, Porteus MH -
Comparative analysis of CRISPR off-target discovery tools following ex vivo editing of CD34+ hematopoietic stem and progenitor cells.
Molecular therapy : the journal of the American Society of Gene Therapy 2023 Cromer MK, Majeti KR, Rettig GR, Murugan K, Kurgan GL, Bode NM, Hampton JP, Vakulskas CA, Behlke MA, Porteus MH -
Ultra-deep sequencing validates safety of CRISPR/Cas9 genome editing in human hematopoietic stem and progenitor cells.
Nature communications 2022 Cromer MK, Barsan VV, Jaeger E, Wang M, Hampton JP, Chen F, Kennedy D, Xiao J, Khrebtukova I, Granat A, Truong T, Porteus MH
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Development of β-globin gene correction in human hematopoietic stem cells as a potential durable treatment for sickle cell disease.
Science translational medicine 2021 Lattanzi A, Camarena J, Lahiri P, Segal H, Srifa W, Vakulskas CA, Frock RL, Kenrick J, Lee C, Talbott N, Skowronski J, Cromer MK, Charlesworth CT, Bak RO, Mantri S, Bao G, DiGiusto D, Tisdale J, … -
Gene replacement of α-globin with β-globin restores hemoglobin balance in β-thalassemia-derived hematopoietic stem and progenitor cells.
Nature medicine 2021 Cromer MK, Camarena J, Martin RM, Lesch BJ, Vakulskas CA, Bode NM, Kurgan G, Collingwood MA, Rettig GR, Behlke MA, Lemgart VT, Zhang Y, Goyal A, Zhao F, Ponce E, Srifa W, Bak RO, Uchida N, Majeti R, … -
Improved Genome Editing through Inhibition of FANCM and Members of the BTR Dissolvase Complex.
Molecular therapy : the journal of the American Society of Gene Therapy 2020 de Alencastro G, Puzzo F, Pavel-Dinu M, Zhang F, Pillay S, Majzoub K, Tiffany M, Jang H, Sheikali A, Cromer MK, Meetei R, Carette JE, Porteus MH, Pekrun K, Kay MA -
Identification of preexisting adaptive immunity to Cas9 proteins in humans.
Nature medicine 2019 Charlesworth CT, Deshpande PS, Dever DP, Camarena J, Lemgart VT, Cromer MK, Vakulskas CA, Collingwood MA, Zhang L, Bode NM, Behlke MA, Dejene B, Cieniewicz B, Romano R, Lesch BJ, Gomez-Ospina N, … -
Priming Human Repopulating Hematopoietic Stem and Progenitor Cells for Cas9/sgRNA Gene Targeting.
Molecular therapy. Nucleic acids 2018 Charlesworth CT, Camarena J, Cromer MK, Vaidyanathan S, Bak RO, Carte JM, Potter J, Dever DP, Porteus MH -
Neomorphic effects of recurrent somatic mutations in Yin Yang 1 in insulin-producing adenomas.
Proceedings of the National Academy of Sciences of the United States of America 2015 Cromer MK, Choi M, Nelson-Williams C, Fonseca AL, Kunstman JW, Korah RM, Overton JD, Mane S, Kenney B, Malchoff CD, Stalberg P, Akerström G, Westin G, Hellman P, Carling T, Björklund P, Lifton RP -
Identification of somatic mutations in parathyroid tumors using whole-exome sequencing.
The Journal of clinical endocrinology and metabolism 2012 Cromer MK, Starker LF, Choi M, Udelsman R, Nelson-Williams C, Lifton RP, Carling T