Kirk Jones, MD
Professor
Pathology
School of Medicine

He also examines lungs removed during surgery for the UCSF Lung Transplant Program and evaluates all post-transplant lung biopsies for signs of infection or rejection of the transplanted lung. He is the primary pathologist for the thoracic tumor board, at which UCSF oncologists and other specialists confer on cases.

Jones earned his medical degree and completed his residency in anatomic pathology and laboratory medicine at UCSF. He also completed a fellowship in cytopathology (the study of cells to diagnose disease) at UCSF. He was subsequently a visiting scholar at the Mayo Clinic in Scottsdale, Arizona, where he studied pulmonary pathology with esteemed pathology specialists Dr. Thomas V. Colby and Dr. Kevin O. Leslie.

Jones is a member of the United States and Canadian Academy of Pathology, Pulmonary Pathology Society, International Association for the Study of Lung Cancer, College of American Pathologists and South Bay Pathology Society.

• Correction to: Genetic and immunohistochemical profiling of small cell and large cell neuroendocrine carcinomas of the breast.
  Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2022 Bean GR, Najjar S, Shin SJ, Hosfield EM, Caswell-Jin JL, Urisman A, Jones KD, Chen YY, Krings G
• Rare case of occupational pulmonary hemorrhage in a firefighter.
  Respiratory medicine case reports 2022 Gandhi SA, Welch TJ, Jones KD, Cummings KJ, Styles L, Blanc PD, Harrison RJ
• Genetic and immunohistochemical profiling of small cell and large cell neuroendocrine carcinomas of the breast.
  Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2022 Bean GR, Najjar S, Shin SJ, Hosfield EM, Caswell-Jin JL, Urisman A, Jones KD, Chen YY, Krings G
• Aerosolized vitamin E acetate causes oxidative injury in mice and in alveolar macrophages.
  American journal of physiology. Lung cellular and molecular physiology 2022 Matsumoto S, Traber MG, Leonard SW, Choi J, Fang X, Maishan M, Wick KD, Jones KD, Calfee CS, Gotts JE, Matthay MA
• Molecular Risk Stratification is Independent of EGFR Mutation Status in Identifying Early-Stage Non-Squamous Non-Small Cell Lung Cancer Patients at Risk for Recurrence and Likely to Benefit From Adjuvant Chemotherapy.
  Clinical lung cancer 2021 Woodard GA, Kratz JR, Haro G, Gubens MA, Blakely CM, Jones KD, Mann MJ, Jablons DM
• Molecular markers of telomere dysfunction and senescence are common findings in the usual interstitial pneumonia pattern of lung fibrosis.
  Histopathology 2021 Lee JS, La J, Aziz S, Dobrinskikh E, Brownell R, Jones KD, Achtar-Zadeh N, Green G, Elicker BM, Golden JA, Matthay MA, Kukreja J, Schwartz DA, Wolters PJ
• Resectability, Recurrence, and Risk Stratification of Giant Solitary Fibrous Tumors in the Thoracic Cavity.
  Annals of surgical oncology 2021 Woodard GA, Fels Elliott DR, Yap A, Haro GJ, Kratz JR, Mann MJ, Jones KD, Jablons DM
• Dose-Dependent Pulmonary Toxicity of Aerosolized Vitamin E Acetate.
  American journal of respiratory cell and molecular biology 2020 Matsumoto S, Fang X, Traber MG, Jones KD, Langelier C, Hayakawa Serpa P, Calfee CS, Matthay MA, Gotts JE
• E-Cigarette or Vaping Product Use-Associated Lung Injury: A Review for Pathologists.
  Archives of pathology & laboratory medicine 2020 Cecchini MJ, Mukhopadhyay S, Arrossi AV, Beasley MB, Butt YM, Jones KD, Pambuccian S, Mehrad M, Monaco SE, Saqi A, Smith ML, Tazelaar HD, Larsen BT
• Exposure Assessment Tools for Hypersensitivity Pneumonitis. An Official American Thoracic Society Workshop Report.
  Annals of the American Thoracic Society 2020 Johannson KA, Barnes H, Bellanger AP, Dalphin JC, Fernández Pérez ER, Flaherty KR, Huang YT, Jones KD, Kawano-Dourado L, Kennedy K, Millerick-May M, Miyazaki Y, Morisset J, Morell F, Raghu GR, Robbins…
• Histopathologic Assessment of Suspected Idiopathic Pulmonary Fibrosis: Where We Are and Where We Need to Go.
  Archives of pathology & laboratory medicine 2020 Smith ML, Hariri LP, Mino-Kenudson M, Dacic S, Attanoos R, Borczuk A, Colby TV, Cooper W, Jones KD, Leslie KO, Mahar A, Larsen BT, Cavazza A, Fukuoka J, Roden AC, Sholl LM, Tazelaar HD, Churg A, …
• Airway Epithelial Telomere Dysfunction Drives Remodeling Similar to Chronic Lung Allograft Dysfunction.
  American journal of respiratory cell and molecular biology 2020 Naikawadi RP, Green G, Jones KD, Achtar-Zadeh N, Mieleszko JE, Arnould I, Kukreja J, Greenland JR, Wolters PJ
• Chronic lung allograft dysfunction small airways reveal a lymphocytic inflammation gene signature.
  American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2020 Dugger DT, Fung M, Hays SR, Singer JP, Kleinhenz ME, Leard LE, Golden JA, Shah RJ, Lee JS, Deiter F, Greenland NY, Jones KD, Langelier CR, Greenland JR
• Telomere length in patients with unclassifiable interstitial lung disease: a cohort study.
  The European respiratory journal 2020 Ley B, Liu S, Elicker BM, Henry TS, Vittinghoff E, Golden JA, Jones KD, Wolters PJ
• A Defect in Thymic Tolerance Causes T Cell-Mediated Autoimmunity in a Murine Model of COPA Syndrome.
  Journal of immunology (Baltimore, Md. : 1950) 2020 Deng Z, Law CS, Ho FO, Wang KM, Jones KD, Shin JS, Shum AK
• Demystifying morphomolecular alterations of vasculature in interstitial lung diseases.
  The European respiratory journal 2020 Yanagihara T, Jones KD
• Reversal of TGFβ1-Driven Profibrotic State in Patients with Pulmonary Fibrosis.
  The New England journal of medicine 2020 Chapman HA, Wei Y, Montas G, Leong D, Golden JA, Trinh BN, Wolters PJ, Le Saux CJ, Jones KD, Hills NK, Foster E, Oldham JM, Linderholm AL, Kotak P, Decaris M, Turner S, Song JW
• Pulmonary Cystic Disease and Its Mimics.
  Surgical pathology clinics 2020 Jones KD
• Pulmonary Pathology: Providing Practical Answers for Busy Pathologists.
  Surgical pathology clinics 2019 Jones KD
• Giant cell interstitial pneumonia secondary to cobalt exposure from e-cigarette use.
  The European respiratory journal 2019 Fels Elliott DR, Shah R, Hess CA, Elicker B, Henry TS, Rule AM, Chen R, Golozar M, Jones KD
• Diagnosis of Mesothelioma.
  Surgical pathology clinics 2019 Fels Elliott DR, Jones KD
• Small Airway Disease: A Step Closer to Etiology-Based Classification of Bronchiolitis.
  Surgical pathology clinics 2019 Urisman A, Jones KD
• Rare Protein-Altering Telomere-related Gene Variants in Patients with Chronic Hypersensitivity Pneumonitis.
  American journal of respiratory and critical care medicine 2019 Ley B, Torgerson DG, Oldham JM, Adegunsoye A, Liu S, Li J, Elicker BM, Henry TS, Golden JA, Jones KD, Dressen A, Yaspan BL, Arron JR, Noth I, Hoffmann TJ, Wolters PJ
• Severe Silicosis in Engineered Stone Fabrication Workers - California, Colorado, Texas, and Washington, 2017-2019.
  MMWR. Morbidity and mortality weekly report 2019 Rose C, Heinzerling A, Patel K, Sack C, Wolff J, Zell-Baran L, Weissman D, Hall E, Sooriash R, McCarthy RB, Bojes H, Korotzer B, Flattery J, Weinberg JL, Potocko J, Jones KD, Reeb-Whitaker CK, Reul NK…
• Case report: recurrent metastatic breast cancer in internal mammary dissection bed discovered at the time of coronary bypass.
  Journal of cardiothoracic surgery 2019 Woodard GA, Lee H, Fels Elliott DR, Jones KD, Wong J, Jablons DM, Ihnken K
• Respiratory Health after Military Service in Southwest Asia and Afghanistan. An Official American Thoracic Society Workshop Report.
  Annals of the American Thoracic Society 2019 Garshick E, Abraham JH, Baird CP, Ciminera P, Downey GP, Falvo MJ, Hart JE, Jackson DA, Jerrett M, Kuschner W, Helmer DA, Jones KD, Krefft SD, Mallon T, Miller RF, Morris MJ, Proctor SP, Redlich CA, …
• Prevalence and Clinical Significance of Antineutrophil Cytoplasmic Antibodies in North American Patients With Idiopathic Pulmonary Fibrosis.
  Chest 2019 Liu GY, Ventura IB, Achtar-Zadeh N, Elicker BM, Jones KD, Wolters PJ, Collard HR, Adegunsoye A, Strek ME, Ley B
• Pulmonary physiology is poorly associated with radiological extent of disease in systemic sclerosis-associated interstitial lung disease.
  The European respiratory journal 2019 Jhajj A, Gill HP, Hague CJ, Murphy D, Elicker B, Soon J, Sulaiman N, Castillo-Saldana D, Wilcox PG, Dunne J, Lee JS, Wolters PJ, Ley B, Jones KD, Morisset J, Ryerson CJ
• Significance of bronchiolocentric fibrosis in patients with histopathological usual interstitial pneumonia.
  Histopathology 2019 Tanizawa K, Ley B, Vittinghoff E, Elicker BM, Henry TS, Wolters PJ, Brownell R, Liu S, Collard HR, Jones KD
• Incorporation of a Molecular Prognostic Classifier Improves Conventional Non-Small Cell Lung Cancer Staging.
  Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer 2019 Kratz JR, Haro GJ, Cook NR, He J, Van Den Eeden SK, Woodard GA, Gubens MA, Jahan TM, Jones KD, Kim IJ, He B, Jablons DM, Mann MJ
• Proceedings of the American College of Rheumatology/Association of Physicians of Great Britain and Ireland Connective Tissue Disease-Associated Interstitial Lung Disease Summit: A Multidisciplinary Approach to Address Challenges and Opportunities.
  QJM : monthly journal of the Association of Physicians 2019 Fischer A, Strek ME, Cottin V, Dellaripa PF, Bernstein EJ, Brown KK, Danoff SK, Distler O, Hirani N, Jones KD, Khanna D, Lee JS, Lynch DA, Maher TM, Millar AB, Raghu G, Silver RM, Steen VD, Volkmann …
• Proceedings of the American College of Rheumatology/Association of Physicians of Great Britain and Ireland Connective Tissue Disease-Associated Interstitial Lung Disease Summit: A Multidisciplinary Approach to Address Challenges and Opportunities.
  Arthritis & rheumatology (Hoboken, N.J.) 2019 Fischer A, Strek ME, Cottin V, Dellaripa PF, Bernstein EJ, Brown KK, Danoff SK, Distler O, Hirani N, Jones KD, Khanna D, Lee JS, Lynch DA, Maher TM, Millar AB, Raghu G, Silver RM, Steen VD, Volkmann …
• Smoking-Related Lung Disease.
  Seminars in ultrasound, CT, and MR 2018 Elicker BM, Kallianos KG, Jones KD, Henry TS
• Histopathological and molecular analysis of idiopathic pulmonary fibrosis lungs from patients treated with pirfenidone or nintedanib.
  Histopathology 2018 Zhang Y, Jones KD, Achtar-Zadeh N, Green G, Kukreja J, Xu B, Wolters PJ
• Pirfenidone-Induced Sarcoid-Like Reaction: A Novel Complication.
  Chest 2018 Kolaitis NA, Kukreja J, Jones KD, Hays SR, Leard LE
• Pulmonary loose tumor tissue fragments and spread through air spaces (STAS): Invasive pattern or artifact? A critical review.
  Lung cancer (Amsterdam, Netherlands) 2018 Blaauwgeers H, Russell PA, Jones KD, Radonic T, Thunnissen E
• Analysis of pulmonary features and treatment approaches in the COPA syndrome.
  ERJ open research 2018 Tsui JL, Estrada OA, Deng Z, Wang KM, Law CS, Elicker BM, Jones KD, Dell SD, Gudmundsson G, Hansdottir S, Helfgott SM, Volpi S, Gattorno M, Waterfield MR, Chan AY, Chung SA, Ley B, Shum AK
• Unclassifiable interstitial lung disease: a pathologist's perspective.
  European respiratory review : an official journal of the European Respiratory Society 2018 Jones KD
• Identification of Diagnostic Criteria for Chronic Hypersensitivity Pneumonitis: An International Modified Delphi Survey.
  American journal of respiratory and critical care medicine 2017 Morisset J, Johannson KA, Jones KD, Wolters PJ, Collard HR, Walsh SLF, Ley B, HP Delphi Collaborators
• The MUC5B promoter polymorphism and telomere length in patients with chronic hypersensitivity pneumonitis: an observational cohort-control study.
  The Lancet. Respiratory medicine 2017 Ley B, Newton CA, Arnould I, Elicker BM, Henry TS, Vittinghoff E, Golden JA, Jones KD, Batra K, Torrealba J, Garcia CK, Wolters PJ
• Mortality Risk Prediction in Scleroderma-Related Interstitial Lung Disease: The SADL Model.
  Chest 2017 Morisset J, Vittinghoff E, Elicker BM, Hu X, Le S, Ryu JH, Jones KD, Haemel A, Golden JA, Boin F, Ley B, Wolters PJ, King TE, Collard HR, Lee JS
• Adjuvant Chemotherapy Guided by Molecular Profiling and Improved Outcomes in Early Stage, Non-Small-Cell Lung Cancer.
  Clinical lung cancer 2017 Woodard GA, Wang SX, Kratz JR, Zoon-Besselink CT, Chiang CY, Gubens MA, Jahan TM, Blakely CM, Jones KD, Mann MJ, Jablons DM
• The performance of the GAP model in patients with rheumatoid arthritis associated interstitial lung disease.
  Respiratory medicine 2017 Morisset J, Vittinghoff E, Lee BY, Tonelli R, Hu X, Elicker BM, Ryu JH, Jones KD, Cerri S, Manfredi A, Sebastiani M, Gross AJ, Ley B, Wolters PJ, King TE, Kim DS, Collard HR, Lee JS
• Understanding the determinants of health-related quality of life in rheumatoid arthritis-associated interstitial lung disease.
  Respiratory medicine 2017 Natalini JG, Swigris JJ, Morisset J, Elicker BM, Jones KD, Fischer A, Collard HR, Lee JS
• Pathologic Findings and Prognosis in a Large Prospective Cohort of Chronic Hypersensitivity Pneumonitis.
  Chest 2017 Wang P, Jones KD, Urisman A, Elicker BM, Urbania T, Johannson KA, Assayag D, Lee J, Wolters PJ, Collard HR, Koth LL
• The use of pretest probability increases the value of high-resolution CT in diagnosing usual interstitial pneumonia.
  Thorax 2017 Brownell R, Moua T, Henry TS, Elicker BM, White D, Vittinghoff E, Jones KD, Urisman A, Aravena C, Johannson KA, Golden JA, King TE, Wolters PJ, Collard HR, Ley B
• Use of Mycophenolate Mofetil or Azathioprine for the Management of Chronic Hypersensitivity Pneumonitis.
  Chest 2016 Morisset J, Johannson KA, Vittinghoff E, Aravena C, Elicker BM, Jones KD, Fell CD, Manganas H, Dubé BP, Wolters PJ, Collard HR, Ryerson CJ, Ley B
• Persistent Pathology in Influenza-Infected Mouse Lungs.
  American journal of respiratory cell and molecular biology 2016 Kanegai CM, Xi Y, Donne ML, Gotts JE, Driver IH, Amidzic G, Lechner AJ, Jones KD, Vaughan AE, Chapman HA, Rock JR
• miR-34 miRNAs Regulate Cellular Senescence in Type II Alveolar Epithelial Cells of Patients with Idiopathic Pulmonary Fibrosis.
  PloS one 2016 Disayabutr S, Kim EK, Cha SI, Green G, Naikawadi RP, Jones KD, Golden JA, Schroeder A, Matthay MA, Kukreja J, Erle DJ, Collard HR, Wolters PJ
• A diagnostic model for chronic hypersensitivity pneumonitis.
  Thorax 2016 Johannson KA, Elicker BM, Vittinghoff E, Assayag D, de Boer K, Golden JA, Jones KD, King TE, Koth LL, Lee JS, Ley B, Wolters PJ, Collard HR
• Nondiagnostic Computed Tomography-guided Percutaneous Lung Biopsies Are More Likely When Infection Is Suspected.
  Journal of thoracic imaging 2016 Haas BM, Elicker BM, Nguyen J, Ordovas KG, Jones KD, Henry TS, Naeger DM
• Idiopathic pulmonary fibrosis: securing a confident diagnosis for every patient.
  The European respiratory journal 2016 Jones MG, Walsh SL, Jones KD, Richeldi L
• Multidisciplinary Approach to Hypersensitivity Pneumonitis.
  Journal of thoracic imaging 2016 Elicker BM, Jones KD, Henry TS, Collard HR
• Lung Cancer Staging and Prognosis.
  Cancer treatment and research 2016 Woodard GA, Jones KD, Jablons DM
• Survival in interstitial pneumonia with features of autoimmune disease: a comparison of proposed criteria.
  Respiratory medicine 2015 Assayag D, Kim EJ, Elicker BM, Jones KD, Golden JA, King TE, Koth LL, Shum AK, Wolters PJ, Collard HR, Lee JS
• A Case of Hypercalcemia and Overexpression of CYP27B1 in Skeletal Muscle Lesions in a Patient with HIV Infection After Cosmetic Injections with Polymethylmethacrylate (PMMA) for Wasting.
  Calcified tissue international 2015 Hindi SM, Wang Y, Jones KD, Nussbaum JC, Chang Y, Masharani U, Bikle D, Shoback DM, Hsiao EC
• The effect of bronchodilators on forced vital capacity measurement in patients with idiopathic pulmonary fibrosis.
  Respiratory medicine 2015 Assayag D, Vittinghoff E, Ryerson CJ, Cocconcelli E, Tonelli R, Hu X, Elicker BM, Golden JA, Jones KD, King TE, Koth LL, Lee JS, Ley B, Shum AK, Wolters PJ, Ryu JH, Collard HR
• Lung transplantation for hypersensitivity pneumonitis.
  Chest 2015 Kern RM, Singer JP, Koth L, Mooney J, Golden J, Hays S, Greenland J, Wolters P, Ghio E, Jones KD, Leard L, Kukreja J, Blanc PD
• COPA mutations impair ER-Golgi transport and cause hereditary autoimmune-mediated lung disease and arthritis.
  Nature genetics 2015 Watkin LB, Jessen B, Wiszniewski W, Vece TJ, Jan M, Sha Y, Thamsen M, Santos-Cortez RL, Lee K, Gambin T, Forbes LR, Law CS, Stray-Pedersen A, Cheng MH, Mace EM, Anderson MS, Liu D, Tang LF, Nicholas …
• Prognostic molecular assay might improve identification of patients at risk for recurrence in early-stage non-small-cell lung cancer.
  Clinical lung cancer 2014 Woodard GA, Gubens MA, Jahan TM, Jones KD, Kukreja J, Theodore PR, Cardozo S, Jew G, Clary-Macy C, Jablons DM, Mann MJ
• Mast cells in a murine lung ischemia-reperfusion model of primary graft dysfunction.
  Respiratory research 2014 Greenland JR, Xu X, Sayah DM, Liu FC, Jones KD, Looney MR, Caughey GH
• Effect of telomere length on survival in patients with idiopathic pulmonary fibrosis: an observational cohort study with independent validation.
  The Lancet. Respiratory medicine 2014 Stuart BD, Lee JS, Kozlitina J, Noth I, Devine MS, Glazer CS, Torres F, Kaza V, Girod CE, Jones KD, Elicker BM, Ma SF, Vij R, Collard HR, Wolters PJ, Garcia CK
• Idiopathic pulmonary fibrosis: CT and risk of death.
  Radiology 2014 Ley B, Elicker BM, Hartman TE, Ryerson CJ, Vittinghoff E, Ryu JH, Lee JS, Jones KD, Richeldi L, King TE, Collard HR
• A comparison of health-related quality of life in idiopathic pulmonary fibrosis and chronic hypersensitivity pneumonitis.
  Chest 2014 Lubin M, Chen H, Elicker B, Jones KD, Collard HR, Lee JS
• Predicting survival across chronic interstitial lung disease: the ILD-GAP model.
  Chest 2014 Ryerson CJ, Vittinghoff E, Ley B, Lee JS, Mooney JJ, Jones KD, Elicker BM, Wolters PJ, Koth LL, King TE, Collard HR
• Pulmonary pathology in connective tissue disease.
  Seminars in respiratory and critical care medicine 2014 Urisman A, Jones KD
• Pulmonary interstitial emphysema in adults: a clinicopathologic study of 53 lung explants.
  The American journal of surgical pathology 2014 Barcia SM, Kukreja J, Jones KD
• MicroRNA-494 within an oncogenic microRNA megacluster regulates G1/S transition in liver tumorigenesis through suppression of mutated in colorectal cancer.
  Hepatology (Baltimore, Md.) 2013 Lim L, Balakrishnan A, Huskey N, Jones KD, Jodari M, Ng R, Song G, Riordan J, Anderton B, Cheung ST, Willenbring H, Dupuy A, Chen X, Brown D, Chang AN, Goga A
• Pathogenesis of idiopathic pulmonary fibrosis.
  Annual review of pathology 2013 Wolters PJ, Collard HR, Jones KD
• Driver mutations among never smoking female lung cancer tissues in China identify unique EGFR and KRAS mutation pattern associated with household coal burning.
  Respiratory medicine 2013 Hosgood HD, Pao W, Rothman N, Hu W, Pan YH, Kuchinsky K, Jones KD, Xu J, Vermeulen R, Simko J, Lan Q
• Whence lepidic?: the history of a Canadian neologism.
  Archives of pathology & laboratory medicine 2013 Jones KD
• Data set for reporting of lung carcinomas: recommendations from International Collaboration on Cancer Reporting.
  Archives of pathology & laboratory medicine 2013 Jones KD, Churg A, Henderson DW, Hwang DM, Ma Wyatt J, Nicholson AG, Rice AJ, Washington MK, Butnor KJ
• Radiographic fibrosis score predicts survival in hypersensitivity pneumonitis.
  Chest 2013 Mooney JJ, Elicker BM, Urbania TH, Agarwal MR, Ryerson CJ, Nguyen MLT, Woodruff PG, Jones KD, Collard HR, King TE, Koth LL
• Clinical features and outcomes in combined pulmonary fibrosis and emphysema in idiopathic pulmonary fibrosis.
  Chest 2013 Ryerson CJ, Hartman T, Elicker BM, Ley B, Lee JS, Abbritti M, Jones KD, King TE, Ryu J, Collard HR
• The acute respiratory distress syndrome in 2013.
  Translational respiratory medicine 2013 Matthay MA, Song Y, Bai C, Jones KD
• Association of large-airway lymphocytic bronchitis with bronchiolitis obliterans syndrome.
  American journal of respiratory and critical care medicine 2012 Greenland JR, Jones KD, Hays SR, Golden JA, Urisman A, Jewell NP, Caughey GH, Trivedi NN
• Rasamsonia argillacea pulmonary and aortic graft infection in an immune-competent patient.
  Journal of clinical microbiology 2012 Doyon JB, Sutton DA, Theodore P, Dhillon G, Jones KD, Thompson EH, Fu J, Wickes BL, Koehler JE, Schwartz BS
• Prevalence and prognosis of unclassifiable interstitial lung disease.
  The European respiratory journal 2012 Ryerson CJ, Urbania TH, Richeldi L, Mooney JJ, Lee JS, Jones KD, Elicker BM, Koth LL, King TE, Wolters PJ, Collard HR
• Prevalence and clinical significance of circulating autoantibodies in idiopathic pulmonary fibrosis.
  Respiratory medicine 2012 Lee JS, Kim EJ, Lynch KL, Elicker B, Ryerson CJ, Katsumoto TR, Shum AK, Wolters PJ, Cerri S, Richeldi L, Jones KD, King TE, Collard HR
• Cleaved cytokeratin-18 is a mechanistically informative biomarker in idiopathic pulmonary fibrosis.
  Respiratory research 2012 Cha SI, Ryerson CJ, Lee JS, Kukreja J, Barry SS, Jones KD, Elicker BM, Kim DS, Papa FR, Collard HR, Wolters PJ
• Rapidly progressive pulmonary venoocclusive disease in young women taking oral contraceptives.
  The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation 2012 Urisman A, Leard LE, Nathan M, Elicker BM, Hoopes C, Kukreja J, Jones KD
• The diagnosis and management of intradiaphragmatic extralobar pulmonary sequestrations: a report of 4 cases.
  Journal of pediatric surgery 2012 Nijagal A, Jelin E, Feldstein VA, Courtier J, Urisman A, Jones KD, Lee H, Hirose S, MacKenzie TC
• Management of plastic bronchitis with topical tissue-type plasminogen activator.
  Pediatrics 2012 Gibb E, Blount R, Lewis N, Nielson D, Church G, Jones K, Ly N
• Pulmonary interstitial glycogenosis: an unrecognized etiology of persistent pulmonary hypertension of the newborn in congenital heart disease?
  Pediatric cardiology 2012 Radman MR, Goldhoff P, Jones KD, Azakie A, Datar S, Adatia I, Oishi PE, Fineman JR
• A multidimensional index and staging system for idiopathic pulmonary fibrosis.
  Annals of internal medicine 2012 Ley B, Ryerson CJ, Vittinghoff E, Ryu JH, Tomassetti S, Lee JS, Poletti V, Buccioli M, Elicker BM, Jones KD, King TE, Collard HR
• Validation of interobserver agreement in lung cancer assessment: hematoxylin-eosin diagnostic reproducibility for non-small cell lung cancer: the 2004 World Health Organization classification and therapeutically relevant subsets.
  Archives of pathology & laboratory medicine 2012 Grilley-Olson JE, Hayes DN, Moore DT, Leslie KO, Wilkerson MD, Qaqish BF, Hayward MC, Cabanski CR, Yin X, Socinski MA, Stinchcombe TE, Thorne LB, Allen TC, Banks PM, Beasley MB, Borczuk AC, Cagle PT, …
• Relative versus absolute change in forced vital capacity in idiopathic pulmonary fibrosis.
  Thorax 2012 Richeldi L, Ryerson CJ, Lee JS, Wolters PJ, Koth LL, Ley B, Elicker BM, Jones KD, King TE, Ryu JH, Collard HR
• Lung mast cell density defines a subpopulation of patients with idiopathic pulmonary fibrosis.
  Histopathology 2012 Cha SI, Chang CS, Kim EK, Lee JW, Matthay MA, Golden JA, Elicker BM, Jones K, Collard HR, Wolters PJ
• Histopathologic approach to the surgical lung biopsy in interstitial lung disease.
  Clinics in chest medicine 2012 Jones KD, Urisman A
• A practical molecular assay to predict survival in resected non-squamous, non-small-cell lung cancer: development and international validation studies.
  Lancet (London, England) 2012 Kratz JR, He J, Van Den Eeden SK, Zhu ZH, Gao W, Pham PT, Mulvihill MS, Ziaei F, Zhang H, Su B, Zhi X, Quesenberry CP, Habel LA, Deng Q, Wang Z, Zhou J, Li H, Huang MC, Yeh CC, Segal MR, Ray MR, Jones…
• Cough predicts prognosis in idiopathic pulmonary fibrosis.
  Respirology (Carlton, Vic.) 2011 Ryerson CJ, Abbritti M, Ley B, Elicker BM, Jones KD, Collard HR
• Activated Notch1 induces lung adenomas in mice and cooperates with Myc in the generation of lung adenocarcinoma.
  Cancer research 2011 Allen TD, Rodriguez EM, Jones KD, Bishop JM
• Gastroesophageal reflux therapy is associated with longer survival in patients with idiopathic pulmonary fibrosis.
  American journal of respiratory and critical care medicine 2011 Lee JS, Ryu JH, Elicker BM, Lydell CP, Jones KD, Wolters PJ, King TE, Collard HR
• CT-guided biopsy of bone and soft-tissue lesions: role of on-site immediate cytologic evaluation.
  Journal of vascular and interventional radiology : JVIR 2011 Virayavanich W, Ringler MD, Chin CT, Baum T, Giaconi JC, O'Donnell RJ, Horvai AE, Jones KD, Link TM
• Interaction between MYC and MCL1 in the genesis and outcome of non-small-cell lung cancer.
  Cancer research 2011 Allen TD, Zhu CQ, Jones KD, Yanagawa N, Tsao MS, Bishop JM
• Plasma biomarker profiles in acute exacerbation of idiopathic pulmonary fibrosis.
  American journal of physiology. Lung cellular and molecular physiology 2010 Collard HR, Calfee CS, Wolters PJ, Song JW, Hong SB, Brady S, Ishizaka A, Jones KD, King TE, Matthay MA, Kim DS
• An update on lung cancer staging.
  Advances in anatomic pathology 2010 Jones KD
• Identification of an autoantigen demonstrates a link between interstitial lung disease and a defect in central tolerance.
  Science translational medicine 2009 Shum AK, DeVoss J, Tan CL, Hou Y, Johannes K, O'Gorman CS, Jones KD, Sochett EB, Fong L, Anderson MS
• Evaluation of diffuse liver steatosis by ultrasound, computed tomography, and magnetic resonance imaging: which modality is best?
  Clinical imaging 2009 Qayyum A, Chen DM, Breiman RS, Westphalen AC, Yeh BM, Jones KD, Lu Y, Coakley FV, Callen PW
• Role of cyclin D1 as a mediator of c-Met- and beta-catenin-induced hepatocarcinogenesis.
  Cancer research 2009 Patil MA, Lee SA, Macias E, Lam ET, Xu C, Jones KD, Ho C, Rodriguez-Puebla M, Chen X
• Fatal diffuse alveolar damage in two lung transplant patients treated with cetuximab.
  The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation 2007 Leard LE, Cho BK, Jones KD, Hays SR, Tope WD, Golden JA, Hoopes CW
• Squamous metaplasia amplifies pathologic epithelial-mesenchymal interactions in COPD patients.
  The Journal of clinical investigation 2007 Araya J, Cambier S, Markovics JA, Wolters P, Jablons D, Hill A, Finkbeiner W, Jones K, Broaddus VC, Sheppard D, Barzcak A, Xiao Y, Erle DJ, Nishimura SL
• Distinct pathways of genomic progression to benign and malignant tumors of the liver.
  Proceedings of the National Academy of Sciences of the United States of America 2007 Tward AD, Jones KD, Yant S, Cheung ST, Fan ST, Chen X, Kay MA, Wang R, Bishop JM
• Idiopathic nonspecific interstitial pneumonia: lung manifestation of undifferentiated connective tissue disease?
  American journal of respiratory and critical care medicine 2007 Kinder BW, Collard HR, Koth L, Daikh DI, Wolters PJ, Elicker B, Jones KD, King TE
• A new mouse model to explore the initiation, progression, and therapy of BRAFV600E-induced lung tumors.
  Genes & development 2007 Dankort D, Filenova E, Collado M, Serrano M, Jones K, McMahon M
• High prevalence of pulmonary arterial thrombi in donor lungs rejected for transplantation.
  The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation 2005 Ware LB, Fang X, Wang Y, Babcock WD, Jones K, Matthay MA
• Transcript signatures of lymphocytic bronchitis in lung allograft biopsy specimens.
  The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation 2005 Xu X, Golden JA, Dolganov G, Jones KD, Donnelly S, Weaver T, Caughey GH
• c-Kit immunophenotyping and metalloproteinase expression profiles of mast cells in interstitial lung diseases.
  The Journal of pathology 2005 Edwards ST, Cruz AC, Donnelly S, Dazin PF, Schulman ES, Jones KD, Wolters PJ, Hoopes C, Dolganov GM, Fang KC
• Obstipation as a paraneoplastic presentation of small cell lung cancer: case report and literature review.
  Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society 2005 Jun S, Dimyan M, Jones KD, Ladabaum U
• Genomic progression in mouse models for liver tumors.
  Cold Spring Harbor symposia on quantitative biology 2005 Tward AD, Jones KD, Yant S, Kay MA, Wang R, Bishop JM
• Prostate depiction at endorectal MR spectroscopic imaging: investigation of a standardized evaluation system.
  Radiology 2004 Jung JA, Coakley FV, Vigneron DB, Swanson MG, Qayyum A, Weinberg V, Jones KD, Carroll PR, Kurhanewicz J
• Induction of mast cell activation and CC chemokine responses in remodeling tracheal allografts.
  American journal of respiratory cell and molecular biology 2004 Cruz AC, Hall TS, Jones KD, Edwards ST, Fang KC
• Isolated pulmonary arteriovenous malformations requiring anatomic resection.
  The Journal of thoracic and cardiovascular surgery 2004 Mann MJ, Kramer MJ, Hall TS, Anastassiou P, Katz J, Golden J, Jones K, Jablons DM
• Prostate cancer localization with endorectal MR imaging and MR spectroscopic imaging: effect of clinical data on reader accuracy.
  Radiology 2004 Dhingsa R, Qayyum A, Coakley FV, Lu Y, Jones KD, Swanson MG, Carroll PR, Hricak H, Kurhanewicz J
• Lung pathology in patients with congenital diaphragmatic hernia treated with fetal surgical intervention, including tracheal occlusion.
  Pediatric and developmental pathology : the official journal of the Society for Pediatric Pathology and the Paediatric Pathology Society 2003 Heerema AE, Rabban JT, Sydorak RM, Harrison MR, Jones KD
• Death from donor-transmitted malignancy despite emergency liver retransplantation.
  Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 2003 Lipshutz GS, Baxter-Lowe LA, Nguyen T, Jones KD, Ascher NL, Feng S
• Lymphangioleiomyomatosis and SZ alpha(1)-antitrypsin disease: a unique combination?
  Chest 2003 Chan AL, Kwack S, Jones KD, Glassberg MK, Gherman CR
• Role of Epstein-Barr virus and cytomegalovirus in the etiology of benign parotid tumors.
  Head & neck 2002 Laane CJ, Murr AH, Mhatre AN, Jones KD, Lalwani AK
• Prostate cancer tumor volume: measurement with endorectal MR and MR spectroscopic imaging.
  Radiology 2002 Coakley FV, Kurhanewicz J, Lu Y, Jones KD, Swanson MG, Chang SD, Carroll PR, Hricak H
• Low tidal volume reduces epithelial and endothelial injury in acid-injured rat lungs.
  American journal of respiratory and critical care medicine 2002 Frank JA, Gutierrez JA, Jones KD, Allen L, Dobbs L, Matthay MA
• SCVIR annual meeting film panel session: diagnosis and discussion of case 1.
  Journal of vascular and interventional radiology : JVIR 2000 Sonne DC, LaBerge JM, Jones KD, Wilson MW
• Interpretation of biopsy findings in the transplant liver.
  Seminars in diagnostic pathology 1998 Jones KD, Ferrell LD