Hiroaki Ishikawa, PhD
Specialist
Biochemistry and Biophysics
School of Medicine

Education & Training

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• Postdoctoral Studies Graduate Division University of California, San Francisco

Publications (26)

Top publication keywords:
Zebrafish ProteinsProtein TransportChlamydomonas reinhardtiiAxonemePlant ProteinsMicrotubulesCentriolesHeat-Shock ProteinsFlagellaBiological TransportCell CycleAlgal ProteinsCiliaOptical ImagingChlamydomonas

• Testing the ion-current model for flagellar length sensing and IFT regulation.
  eLife 2023 Ishikawa H, Moore J, Diener DR, Delling M, Marshall WF
• Biosynthesis of Linear Protein Nanoarrays Using the Flagellar Axoneme.
  ACS synthetic biology 2022 Ishikawa H, Tian JL, Yu JE, Marshall WF, Qin H
• Testing the ion-current model of flagellar length-sensing.
  Biophysical Journal 2022 Hiroaki Ishikawa, Dennis Diener, Markus Delling, Wallace Marshall
• A simple method to generate human airway epithelial organoids with externally orientated apical membranes.
  American journal of physiology. Lung cellular and molecular physiology 2022 Boecking CA, Walentek P, Zlock LT, Sun DI, Wolters PJ, Ishikawa H, Jin BJ, Haggie PM, Marshall WF, Verkman AS, Finkbeiner WE
• The short flagella 1 (SHF1) gene in Chlamydomonas encodes a Crescerin TOG-domain protein required for late stages of flagellar growth.
  Molecular biology of the cell 2021 Perlaza K, Mirvis M, Ishikawa H, Marshall W

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• Analysis of biological noise in the flagellar length control system.
  iScience 2021 Bauer D, Ishikawa H, Wemmer KA, Hendel NL, Kondev J, Marshall WF
• Odf2 haploinsufficiency causes a new type of decapitated and decaudated spermatozoa, Odf2-DDS, in mice.
  Scientific reports 2019 Ito C, Akutsu H, Yao R, Yoshida K, Yamatoya K, Mutoh T, Makino T, Aoyama K, Ishikawa H, Kunimoto K, Tsukita S, Noda T, Kikkawa M, Toshimori K
• Testing the time-of-flight model for flagellar length sensing.
  Molecular biology of the cell 2017 Ishikawa H, Marshall WF
• Intraflagellar Transport and Ciliary Dynamics.
  Cold Spring Harbor perspectives in biology 2017 Ishikawa H, Marshall WF
• Versatile protein tagging in cells with split fluorescent protein.
  Nature communications 2016 Kamiyama D, Sekine S, Barsi-Rhyne B, Hu J, Chen B, Gilbert LA, Ishikawa H, Leonetti MD, Marshall WF, Weissman JS, Huang B
• A systematic comparison of mathematical models for inherent measurement of ciliary length: how a cell can measure length and volume.
  Biophysical journal 2015 Ludington WB, Ishikawa H, Serebrenik YV, Ritter A, Hernandez-Lopez RA, Gunzenhauser J, Kannegaard E, Marshall WF
• Efficient live fluorescence imaging of intraflagellar transport in mammalian primary cilia.
  Methods in cell biology 2015 Ishikawa H, Marshall WF
• Mechanobiology of Ciliogenesis.
  Bioscience 2014 Ishikawa H, Marshall WF
• Correction: TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella.
  eLife 2014 Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF
• FAP20 is an inner junction protein of doublet microtubules essential for both the planar asymmetrical waveform and stability of flagella in Chlamydomonas.
  Molecular biology of the cell 2014 Yanagisawa HA, Mathis G, Oda T, Hirono M, Richey EA, Ishikawa H, Marshall WF, Kikkawa M, Qin H
• Primary Cilia Respond to Uniaxial Strain by Reorienting and Elongating along the Axis of Stretch.
  Biophysical Journal 2014 Hiroaki Ishikawa, Wallace F. Marshall
• TTC26/DYF13 is an intraflagellar transport protein required for transport of motility-related proteins into flagella.
  eLife 2014 Ishikawa H, Ide T, Yagi T, Jiang X, Hirono M, Sasaki H, Yanagisawa H, Wemmer KA, Stainier DY, Qin H, Kamiya R, Marshall WF
• Two appendages homologous between basal bodies and centrioles are formed using distinct Odf2 domains.
  The Journal of cell biology 2013 Tateishi K, Yamazaki Y, Nishida T, Watanabe S, Kunimoto K, Ishikawa H, Tsukita S
• Isolation of mammalian primary cilia.
  Methods in enzymology 2013 Ishikawa H, Marshall WF
• Loss of basal feet on Odf2 deletion perturbs polarization of basal bodies.
  Cilia 2012 K Kunimoto, YY Yamazaki, TN Nishida, KS Shinohara, HI Ishikawa, TH Hasegawa, TO Okanoue, HH Hamada, TN Noda, AT Tamura, ST Shoichiro Tsukita
• The role of retrograde intraflagellar transport in flagellar assembly, maintenance, and function.
  The Journal of cell biology 2012 Engel BD, Ishikawa H, Wemmer KA, Geimer S, Wakabayashi K, Hirono M, Craige B, Pazour GJ, Witman GB, Kamiya R, Marshall WF
• Proteomic analysis of mammalian primary cilia.
  Current biology : CB 2012 Ishikawa H, Thompson J, Yates JR, Marshall WF
• Coordinated ciliary beating requires Odf2-mediated polarization of basal bodies via basal feet.
  Cell 2012 Kunimoto K, Yamazaki Y, Nishida T, Shinohara K, Ishikawa H, Hasegawa T, Okanoue T, Hamada H, Noda T, Tamura A, Tsukita S, Tsukita S
• Ciliogenesis: building the cell's antenna.
  Nature reviews. Molecular cell biology 2011 Ishikawa H, Marshall WF
• A cell-based screen for inhibitors of flagella-driven motility in Chlamydomonas reveals a novel modulator of ciliary length and retrograde actin flow.
  Cytoskeleton (Hoboken, N.J.) 2011 Engel BD, Ishikawa H, Feldman JL, Wilson CW, Chuang PT, Snedecor J, Williams J, Sun Z, Marshall WF
• Odf2-deficient mother centrioles lack distal/subdistal appendages and the ability to generate primary cilia.
  Nature cell biology 2005 Ishikawa H, Kubo A, Tsukita S, Tsukita S