Felipe Pereira, PhD
Specialist
Neurology
School of Medicine

Publications (43)

Top publication keywords:
Oncorhynchus mykissCorynebacterium pseudotuberculosisMultilocus Sequence TypingGram-Negative Bacterial InfectionsFish DiseasesBacterial Typing TechniquesFrancisellaFishesGenome, BacterialTemperatureCichlidsWeissellaWhole Genome SequencingIridoviridaeStreptococcus agalactiae

• Frontotemporal lobar degeneration targets brain regions linked to expression of recently evolved genes.
  Brain : a journal of neurology 2024 Pasquini L, Pereira FL, Seddighi S, Zeng Y, Wei Y, Illán-Gala I, Vatsavayai SC, Friedberg A, Lee AJ, Brown JA, Spina S, Grinberg LT, Sirkis DW, Bonham LW, Yokoyama JS, Boxer AL, Kramer JH, Rosen HJ, …
• FTLD targets brain regions expressing recently evolved genes.
  medRxiv : the preprint server for health sciences 2023 Pasquini L, Pereira FL, Seddighi S, Zeng Y, Wei Y, Illán-Gala I, Vatsavayai SC, Friedberg A, Lee AJ, Brown JA, Spina S, Grinberg LT, Sirkis DW, Bonham LW, Yokoyama JS, Boxer AL, Kramer JH, Rosen HJ, …
• Synergic Effect of Brachyspira hyodysenteriae and Lawsonia intracellularis Coinfection: Anatomopathological and Microbiome Evaluation.
  Animals : an open access journal from MDPI 2023 Daniel AGS, Pereira CER, Dorella F, Pereira FL, Laub RP, Andrade MR, Barrera-Zarate JA, Gabardo MP, Otoni LVA, Macedo NR, Correia PA, Costa CM, Vasconcellos AO, Wagatsuma MM, Marostica TP, Figueiredo …
• Correction to: Comparative polyphasic characterization of Weissella strains isolated from beaked whale and rainbow trout (Oncorhynchus mykiss): confirmation of Weissella ceti sp. nov. and description of the novel Weissella tructae sp. nov. isolated from farmed rainbow trout.
  Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 2023 Pereira FL, Dorella FA, Castrejón-Nájera J, Reis FYT, Ortega C, Irgang R, Echeverría-Bugueño M, Avendaño-Herrera R, Figueiredo HCP
• Transmission of Escherichia coli Causing Pyometra between Two Female Dogs.
  Microorganisms 2022 Xavier RGC, Santana CH, da Silva PHS, Aburjaile FF, Pereira FL, Figueiredo HCP, Freitas PMC, Santos RL, Silva ROS

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• Comparative polyphasic characterization of Weissella strains isolated from beaked whale and rainbow trout (Oncorhynchus mykiss): confirmation of Weissella ceti sp. nov. and description of the novel Weissella tructae sp. nov. isolated from farmed rainbow trout.
  Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] 2022 Pereira FL, Dorella FA, Castrejón-Nájera J, Reis FYT, Ortega C, Irgang R, Echeverría-Bugueño M, Avendaño-Herrera R, Figueiredo HCP
• Rainwater Charitable Foundation criteria for the neuropathologic diagnosis of progressive supranuclear palsy.
  Acta neuropathologica 2022 Roemer SF, Grinberg LT, Crary JF, Seeley WW, McKee AC, Kovacs GG, Beach TG, Duyckaerts C, Ferrer IA, Gelpi E, Lee EB, Revesz T, White CL, Yoshida M, Pereira FL, Whitney K, Ghayal NB, Dickson DW
• Caspase-6-cleaved tau is relevant in Alzheimer's disease and marginal in four-repeat tauopathies: Diagnostic and therapeutic implications.
  Neuropathology and applied neurobiology 2022 Theofilas P, Piergies AMH, Oh I, Lee YB, Li SH, Pereira FL, Petersen C, Ehrenberg AJ, Eser RA, Ambrose AJ, Chin B, Yang T, Khan S, Ng R, Spina S, Seeley WW, Miller BL, Arkin MR, Grinberg LT
• Subcortical Neuronal Correlates of Sleep in Neurodegenerative Diseases.
  JAMA neurology 2022 Oh JY, Walsh CM, Ranasinghe K, Mladinov M, Pereira FL, Petersen C, Falgàs N, Yack L, Lamore T, Nasar R, Lew C, Li S, Metzler T, Coppola Q, Pandher N, Le M, Heuer HW, Heinsen H, Spina S, Seeley WW, …
• First report of infectious spleen and kidney necrosis virus in Nile tilapia in Brazil.
  Transboundary and emerging diseases 2021 Figueiredo HCP, Tavares GC, Dorella FA, Rosa JCC, Marcelino SAC, Pierezan F, Pereira FL
• Re-sequencing and optical mapping reveals misassemblies and real inversions on Corynebacterium pseudotuberculosis genomes.
  Scientific reports 2019 Sousa TJ, Parise D, Profeta R, Parise MTD, Gomide ACP, Kato RB, Pereira FL, Figueiredo HCP, Ramos R, Brenig B, Costa da Silva ALD, Ghosh P, Barh D, Góes-Neto A, Azevedo V
• Effects of temperature changes in the transcriptional profile of the emerging fish pathogen Francisella noatunensis subsp. orientalis.
  Microbial pathogenesis 2019 Pereira FL, Tavares GC, de Carvalho AF, Rosa JCC, Rezende CP, Leal CAG, Figueiredo HCP
• Streptococcus agalactiae Sequence Type 283 in Farmed Fish, Brazil.
  Emerging infectious diseases 2019 Leal CAG, Queiroz GA, Pereira FL, Tavares GC, Figueiredo HCP
• Delineation of the pan-proteome of fish-pathogenic Streptococcus agalactiae strains using a label-free shotgun approach.
  BMC genomics 2019 Tavares GC, Pereira FL, Barony GM, Rezende CP, da Silva WM, de Souza GHMF, Verano-Braga T, de Carvalho Azevedo VA, Leal CAG, Figueiredo HCP
• Transcriptome and Proteome of Fish-Pathogenic Streptococcus agalactiae Are Modulated by Temperature.
  Frontiers in microbiology 2018 Tavares GC, Carvalho AF, Pereira FL, Rezende CP, Azevedo VAC, Leal CAG, Figueiredo HCP
• Complete genome sequencing of sixteen Francisella noatunensis subsp. orientalis isolates: A genomic approach for molecular characterization and spread dynamics of this clonal population.
  Genomics 2018 Pereira FL, Gonçalves LA, Tavares GC, Soares SC, Dorella FA, de Carvalho AF, Leibowitz MP, Leal CAG, Azevedo VAC, Figueiredo HCP
• Comparative proteomic analysis of four biotechnological strains Lactococcus lactis through label-free quantitative proteomics.
  Microbial biotechnology 2018 Silva WM, Sousa CS, Oliveira LC, Soares SC, Souza GFMH, Tavares GC, Resende CP, Folador EL, Pereira FL, Figueiredo H, Azevedo V
• First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico.
  Standards in genomic sciences 2018 Parise D, Parise MTD, Viana MVC, Muñoz-Bucio AV, Cortés-Pérez YA, Arellano-Reynoso B, Díaz-Aparicio E, Dorella FA, Pereira FL, Carvalho AF, Figueiredo HCP, Ghosh P, Barh D, Gomide ACP, Azevedo VAC
• Gut microbiome modulation during treatment of mucositis with the dairy bacterium Lactococcus lactis and recombinant strain secreting human antimicrobial PAP.
  Scientific reports 2018 Carvalho R, Vaz A, Pereira FL, Dorella F, Aguiar E, Chatel JM, Bermudez L, Langella P, Fernandes G, Figueiredo H, Goes-Neto A, Azevedo V
• Mutation of the Surface Layer Protein SlpB Has Pleiotropic Effects in the Probiotic Propionibacterium freudenreichii CIRM-BIA 129.
  Frontiers in microbiology 2018 do Carmo FLR, Silva WM, Tavares GC, Ibraim IC, Cordeiro BF, Oliveira ER, Rabah H, Cauty C, da Silva SH, Canário Viana MV, Caetano ACB, Dos Santos RG, de Oliveira Carvalho RD, Jardin J, Pereira FL, …
• Transcriptome analysis of Corynebacterium pseudotuberculosis biovar Equi in two conditions of the environmental stress.
  Gene 2018 Gomide ACP, Ibraim IC, Alves JTC, de Sá PG, de Oliveira Silva YR, Santana MP, Silva WM, Folador EL, Mariano DCB, de Paula Castro TL, Barbosa S, Dorella FA, Carvalho AF, Pereira FL, Leal CAG, …
• Label-free proteome of water buffalo (Bubalus bubalis) seminal plasma.
  Reproduction in domestic animals = Zuchthygiene 2018 Brito MF, Auler PA, Tavares GC, Rezende CP, Almeida GMF, Pereira FL, Leal CAG, Moura AA, Figueiredo HCP, Henry M
• Large-scale genomic analyses reveal the population structure and evolutionary trends of Streptococcus agalactiae strains in Brazilian fish farms.
  Scientific reports 2017 Barony GM, Tavares GC, Pereira FL, Carvalho AF, Dorella FA, Leal CAG, Figueiredo HCP
• Use of MALDI-TOF Mass Spectrometry for the Fast Identification of Gram-Positive Fish Pathogens.
  Frontiers in microbiology 2017 Assis GBN, Pereira FL, Zegarra AU, Tavares GC, Leal CA, Figueiredo HCP
• Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
  PloS one 2017 Viana MVC, Figueiredo H, Ramos R, Guimarães LC, Pereira FL, Dorella FA, Selim SAK, Salaheldean M, Silva A, Wattam AR, Azevedo V
• SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology.
  BMC bioinformatics 2016 Mariano DC, Pereira FL, Aguiar EL, Oliveira LC, Benevides L, Guimarães LC, Folador EL, Sousa TJ, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA
• Complete Genome Sequence of the Attenuated Corynebacterium pseudotuberculosis Strain T1.
  Genome announcements 2016 Almeida S, Loureiro D, Portela RW, Mariano DC, Sousa TJ, Pereira FL, Dorella FA, Carvalho AF, Moura-Costa LF, Leal CA, Figueiredo HC, Meyer R, Azevedo V
• Whole-Genome Sequence of Corynebacterium auriscanis Strain CIP 106629 Isolated from a Dog with Bilateral Otitis from the United Kingdom.
  Genome announcements 2016 Tiwari S, Jamal SB, Oliveira LC, Clermont D, Bizet C, Mariano D, de Carvalho PV, Souza F, Pereira FL, de Castro Soares S, Guimarães LC, Dorella F, Carvalho A, Leal C, Barh D, Figueiredo H, Hassan SS, …
• Complete genome sequence of Streptococcus agalactiae strain GBS85147 serotype of type Ia isolated from human oropharynx.
  Standards in genomic sciences 2016 de Aguiar EL, Mariano DC, Viana MV, Benevides Lde J, de Souza Rocha F, de Castro Oliveira L, Pereira FL, Dorella FA, Leal CA, de Carvalho AF, Santos GS, Mattos-Guaraldi AL, Nagao PE, de Castro Soares …
• Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002.
  BMC genomics 2016 Mariano DC, Sousa Tde J, Pereira FL, Aburjaile F, Barh D, Rocha F, Pinto AC, Hassan SS, Saraiva TD, Dorella FA, de Carvalho AF, Leal CA, Figueiredo HC, Silva A, Ramos RT, Azevedo VA
• Complete genome sequences of Francisella noatunensis subsp. orientalis strains FNO12, FNO24 and FNO190: a fish pathogen with genomic clonal behavior.
  Standards in genomic sciences 2016 Gonçalves LA, de Castro Soares S, Pereira FL, Dorella FA, de Carvalho AF, de Freitas Almeida GM, Leal CA, Azevedo V, Figueiredo HC
• The genome anatomy of Corynebacterium pseudotuberculosis VD57 a highly virulent strain causing Caseous lymphadenitis.
  Standards in genomic sciences 2016 Almeida S, Tiwari S, Mariano D, Souza F, Jamal SB, Coimbra N, Raittz RT, Dorella FA, Carvalho AF, Pereira FL, Soares Sde C, Leal CA, Barh D, Ghosh P, Figueiredo H, Moura-Costa LF, Portela RW, Meyer R,…
• Complete genome sequence of Peptoclostridium difficile strain Z31.
  Gut pathogens 2016 Pereira FL, Oliveira Júnior CA, Silva ROS, Dorella FA, Carvalho AF, Almeida GMF, Leal CAG, Lobato FCF, Figueiredo HCP
• Evaluating the efficacy of the new Ion PGM Hi-Q Sequencing Kit applied to bacterial genomes.
  Genomics 2016 Pereira FL, Soares SC, Dorella FA, Leal CA, Figueiredo HC
• Draft Genome Sequences of Two Pathogenic Corynebacterial Species Isolated from Cows.
  Journal of genomics 2016 Guimarães LC, Lopes T, Ramos RT, Carneiro AR, Cavalcante AL, Barreto D, de Sá PC, Veras AA, Rocha FS, Bagano P, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Bizet C, Guiso N, Badell E, Figueiredo HC,…
• Complete Genome Sequence of Corynebacterium pseudotuberculosis Viscerotropic Strain N1.
  Genome announcements 2016 Loureiro D, Portela RW, Sousa TJ, Rocha F, Pereira FL, Dorella FA, Carvalho AF, Menezes N, Macedo ES, Moura-Costa LF, Meyer R, Leal CA, Figueiredo HC, Azevedo V
• Draft Genome Sequences of Two Salmonella enterica Serotype Infantis Strains Isolated from a Captive Western Lowland Gorilla (Gorilla gorilla gorilla) and a Cohabitant Black and White Tegu (Tupinambis merianae) in Brazil.
  Genome announcements 2016 Paixão TA, Coura FM, Malta MC, Tinoco HP, Pessanha AT, Pereira FL, Leal CA, Heinemann MB, Figueiredo HC, Santos RL
• Comparative genome analysis of Weissella ceti, an emerging pathogen of farm-raised rainbow trout.
  BMC genomics 2015 Figueiredo HC, Soares SC, Pereira FL, Dorella FA, Carvalho AF, Teixeira JP, Azevedo VA, Leal CA
• Draft Genome Sequences of Two Species of "Difficult-to-Identify" Human-Pathogenic Corynebacteria: Implications for Better Identification Tests.
  Journal of genomics 2015 Pacheco LG, Mattos-Guaraldi AL, Santos CS, Veras AA, Guimarães LC, Abreu V, Pereira FL, Soares SC, Dorella FA, Carvalho AF, Leal CG, Figueiredo HC, Ramos JN, Vieira VV, Farfour E, Guiso N, Hirata R, …
• MapRepeat: an approach for effective assembly of repetitive regions in prokaryotic genomes.
  Bioinformation 2015 Mariano DC, Pereira FL, Ghosh P, Barh D, Figueiredo HC, Silva A, Ramos RT, Azevedo VA
• Genome Sequence of Corynebacterium ulcerans Strain FRC11.
  Genome announcements 2015 Benevides Lde J, Viana MV, Mariano DC, Rocha Fde S, Bagano PC, Folador EL, Pereira FL, Dorella FA, Leal CA, Carvalho AF, Soares Sde C, Carneiro A, Ramos R, Badell-Ocando E, Guiso N, Silva A, …
• Genome Sequence of Corynebacterium ulcerans Strain 210932.
  Genome announcements 2014 Viana MV, de Jesus Benevides L, Batista Mariano DC, de Souza Rocha F, Bagano Vilas Boas PC, Folador EL, Pereira FL, Alves Dorella F, Gomes Leal CA, Fiorini de Carvalho A, Silva A, de Castro Soares S, …
• Genome Sequence of Lactococcus lactis subsp. lactis NCDO 2118, a GABA-Producing Strain.
  Genome announcements 2014 Oliveira LC, Saraiva TD, Soares SC, Ramos RT, Sá PH, Carneiro AR, Miranda F, Freire M, Renan W, Júnior AF, Santos AR, Pinto AC, Souza BM, Castro CP, Diniz CA, Rocha CS, Mariano DC, de Aguiar EL, …