Daniel Hogan, PhD
BIOINFORMATICS PROGR 4
Bioengineering
School of Pharmacy

Publications (9)

Top publication keywords:
SoftwareRiboswitchSpodopteraNucleic Acid ConformationProteinsModels, MolecularLigandsSf9 CellsAlgorithmsMicrotubulesRecombinant ProteinsRNA FoldingThiamine PyrophosphateRNA, MessengerProtein Binding

• Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM.
  bioRxiv : the preprint server for biology 2023 Wankowicz SA, Ravikumar A, Sharma S, Riley BT, Raju A, Hogan DW, van den Bedem H, Keedy DA, Fraser JS
• Author Reply to "Regarding 'No Difference in Complication Rates or Patient-Reported Outcomes Between Bone-Patellar Tendon-Bone and Quadriceps Tendon Autograft for Anterior Cruciate Ligament Reconstruction"'.
  Arthroscopy : the journal of arthroscopic & related surgery : official publication of the Arthroscopy Association of North America and the International Arthroscopy Association 2022 Hogan DW, Burch MB, Rund JM, Geeslin DW, Ma R, Gray AF, Chu CR, Ray TE, Pullen WM, Sherman SL
• Ligand binding remodels protein side-chain conformational heterogeneity.
  eLife 2022 Wankowicz SA, de Oliveira SH, Hogan DW, van den Bedem H, Fraser JS
• No Difference in Complication Rates or Patient-Reported Outcomes Between Bone-Patella Tendon-Bone and Quadriceps Tendon Autograft for Anterior Cruciate Ligament Reconstruction.
  Arthroscopy, sports medicine, and rehabilitation 2021 Hogan DW, Burch MB, Rund JM, Geeslin DW, Ma R, Gray AF, Chu CR, Ray TE, Pullen WM, Sherman SL
• qFit 3: Protein and ligand multiconformer modeling for X-ray crystallographic and single-particle cryo-EM density maps.
  Protein science : a publication of the Protein Society 2020 Riley BT, Wankowicz SA, de Oliveira SHP, van Zundert GCP, Hogan DW, Fraser JS, Keedy DA, van den Bedem H

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• Intraflagellar transport velocity is governed by the number of active KIF17 and KIF3AB motors and their motility properties under load.
  Proceedings of the National Academy of Sciences of the United States of America 2017 Milic B, Andreasson JOL, Hogan DW, Block SM
• Observation of long-range tertiary interactions during ligand binding by the TPP riboswitch aptamer.
  eLife 2015 Duesterberg VK, Fischer-Hwang IT, Perez CF, Hogan DW, Block SM
• Traumatic carotid-rosenthal fistula treated with Jostent Graftmaster.
  World journal of radiology 2014 Allam H, Callison RC, Scodary D, Alawi A, Hogan DW, Alshekhlee A
• Observations of Dicke narrowing and speed dependence in air-broadened CO₂ lineshapes near 2.06 μm.
  The Journal of chemical physics 2014 Bui TQ, Long DA, Cygan A, Sironneau VT, Hogan DW, Rupasinghe PM, Ciurylo R, Lisak D, Okumura M