Chiung-Yu Huang, PhD, MS
Professor
Epidemiology & Biostatistics
School of Medicine

Dr. Huang is a Fellow of the American Statistical Association (ASA) and is well known for her contributions to methodology research, particularly in the areas of survival analysis, competing risks analysis, recurrent event analysis, outcome-dependent sampling, and the design and evaluation of vaccine efficacy trials.

Dr. Huang's recent work has focused on developing innovative statistical methodologies to improve analysis efficiency in small-scale studies by integrating external large databases, modeling and predicting the risk of recurrent events to identify high-risk individuals, and incorporating information on infecting pathogens in the analysis of vaccine trials with active or passive surveillance. Additionally, she has developed efficient statistical methods for analyzing survival data collected in prevalent cohort studies, benefit-risk assessment tools for evaluating treatment risks and benefits in patients with end-stage disease, and statistical methods that can account for informative clinic visits in the analysis of electronic health records.

In addition to her methodological research, Dr. Huang has extensive experience in collaborative research across a wide range of fields, including influenza, malaria, transplant, and cancer studies. During her tenure as a Mathematical Statistician at the National Institute of Allergy and Infectious Diseases (NIAID), she collaborated with both extramural and intramural scientists on the design, conduct, monitoring, analysis, and presentation of preclinical and clinical studies. She also served as a statistician to the NIAID Influenza Research Collaboration (NIRC) and the Mexican Emerging Infectious Disease Clinical Research Network (La Red), and received numerous awards for her collaborative research, including the prestigious NIAID Merit Award.

Since joining UCSF in 2017, Dr. Huang has served as the lead statistician for the Hematopoietic Malignancies Program at UCSF Helen Diller Family Comprehensive Cancer Center and the University of California Hematologic Malignancies Consortium (UCHMC). She also established and currently serves as the core director of the UCSF Department of Surgery Biostatistics Research Core, which provides statistical support to surgery investigators in designing and conducting rigorous, high-quality research.

• Assessing Adherence to US LI-RADS Follow-up Recommendations in Vulnerable Patients Undergoing Hepatocellular Carcinoma Surveillance.
  Radiology. Imaging cancer 2024 Choi HH, Kim S, Shum DJ, Huang CY, Shui A, Fox RK, Khalili M
• The liver frailty index is a predictor of healthcare utilization after liver transplantation in older adults.
  Clinical transplantation 2023 Wang M, Shui AM, Ruck J, King E, Rahimi R, Kappus M, Volk ML, Ganger DR, Ladner DP, Duarte-Rojo A, Huang CY, Verna EC, Lai JC
• Neighborhood Income Is Associated with Health Care Use in Pediatric Short Bowel Syndrome.
  The Journal of pediatrics 2023 Gutierrez SA, Pathak S, Raghu V, Shui A, Huang CY, Rhee S, McKenzie-Sampson S, Lai JC, Wadhwani SI
• Maximum likelihood estimation for shape-restricted single-index hazard models
  Journal of Data Science 2023 Qin J, Sun Y, Yuan A, Huang CY.
• Simultaneous selection and incorporation of consistent external aggregate information.
  Statistics in medicine 2023 Huang Y, Huang CY, Kim MO
• Association of state Medicaid expansion policies with pediatric liver transplant outcomes.
  American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2023 Shifman HP, Huang CY, Beck AF, Bucuvalas J, Perito ER, Hsu EK, Ebel NH, Lai JC, Wadhwani SI
• Randomized phase 2 study of digital life coaching during transplantation for myeloma.
  Bone marrow transplantation 2023 Banerjee R, Huang CY, Ryan C, Lee A, Brassil KJ, Moore J, Arora S, Chung A, Wong SW, Wolf J, Martin T, Dhruva A, Shah N
• Variation in skeletal muscle mass among patients with cirrhosis of different self-identified race/ethnicity.
  JGH open : an open access journal of gastroenterology and hepatology 2023 Ha NB, Fan B, Seetharaman S, Kent DS, Yao F, Shui AM, Huang CY, Wadhwani SI, Lai JC
• Correlation of SUV on Early Interim PET with Recurrence-Free Survival and Overall Survival in Primary Operable HER2-Positive Breast Cancer (the TBCRC026 Trial).
  Journal of nuclear medicine : official publication, Society of Nuclear Medicine 2023 Hennessy MA, Leal JP, Huang CY, Solnes LB, Denbow R, Abramson VG, Carey LA, Liu MC, Rimawi M, Specht J, Storniolo AM, Valero V, Vaklavas C, Winer EP, Krop IE, Wolff AC, Cimino-Mathews A, Wahl RL, …
• Impact of corticosteroids on efficacy of BCMA targeted CAR-T therapy in multiple myeloma.
  Leukemia & lymphoma 2023 Duvalyan E, Shah N, Lo M, Martin T, Wolf JL, Chung A, Arora S, Huang CY, Wong SW
• Ethnic differences in staphylococcus aureus acquisition in cystic fibrosis.
  Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society 2023 McGarry ME, Huang CY, Ly NP
• Diabetes mellitus and risk of breast cancer: a large-scale, prospective, population-based study.
  British journal of cancer 2023 Xiong F, Wang J, Nierenberg JL, Van Blarigan EL, Kenfield SA, Chan JM, Schmajuk G, Huang CY, Graff RE
• Hypoxia-specific imaging in patients with lymphoma undergoing CAR-T therapy.
  European journal of nuclear medicine and molecular imaging 2023 Banerjee R, Wang V, Huang CY, Pandita D, Leonard MK, LaRue S, Ahmadi M, Kaplan L, Ai WZ, Fakhri B, Spinner M, Seshadri MR, Pampaloni MH, Andreadis CB
• The Association Between Frailty and Chronic Lung Allograft Dysfunction After Lung Transplantation.
  Transplantation 2023 Singer JP, Gao Y, Huang CY, Kordahl RC, Sriram A, Hays SR, Kukreja J, Venado A, Calabrese DR, Greenland JR
• Clinical Characteristics Associated With Posttransplant Survival Among Adults 70 Years Old or Older Undergoing Liver Transplantation.
  Journal of clinical gastroenterology 2023 Wang M, Ge J, Ha N, Shui AM, Huang CY, Cullaro G, Lai JC
• Intensity of Cyclophosphamide-Based Bridging Therapy Before Chimeric Antigen Receptor T Cell Therapy in Myeloma.
  Transplantation and cellular therapy 2023 Zafar A, Huang CY, Lo M, Arora S, Chung A, Wong SW, Wolf J, Martin TG, Shah N, Banerjee R
• Steroid Avoidance After Adult Living Donor Liver Transplant: A Cohort Analysis.
  Transplantation direct 2023 Nunez M, Praglin CR, Torres AM, Agudelo EZ, Braun HJ, Huang CY, Syed S, Roberts JP, Roll GR
• DYNAMIC RISK PREDICTION TRIGGERED BY INTERMEDIATE EVENTS USING SURVIVAL TREE ENSEMBLES.
  The annals of applied statistics 2023 Sun Y, Chiou SH, Wu CO, McGarry M, Huang CY
• Significance of the pee-value: relevance of 24-hour urine studies for patients with myeloma.
  Leukemia & lymphoma 2023 Natsuhara KH, Huang CY, Knoche J, Arora S, Chung A, Martin T, Wolf J, Wong SW, Shah N, Banerjee R
• The tele-liver frailty index (TeLeFI): development of a novel frailty tool in patients with cirrhosis via telemedicine.
  American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2023 Wang M, Shui AM, Barry F, Verna E, Kent D, Yao F, Seetharaman S, Berry K, Grubbs RK, George G, Huang CY, Duarte-Rojo A, Lai JC
• Difficult or high risk? Objective task assessment vs. faculty perceptions of surgical skills
  Global Surgical Education 2023 Greenberg AL, Barnes KE, Karimzada MM, Huang CY, Alseidi A, Rapp JH, O’Sullivan PS, Chern H, Syed SM
• Serum and plasma protein biomarkers associated with frailty in patients with cirrhosis.
  Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 2023 Ha NB, Seetharaman S, Kent DS, Yao F, Shui AM, Huang CY, Walston J, Lai JC
• Safety and Efficacy of BCMA CAR-T Cell Therapy in Older Patients With Multiple Myeloma.
  Transplantation and cellular therapy 2023 Reyes KR, Huang CY, Lo M, Arora S, Chung A, Wong SW, Wolf J, Olin RL, Martin T, Shah N, Banerjee R
• Cytomegalovirus seropositivity is associated with improved responses to CD38 monoclonal antibody therapies in multiple myeloma: A single-centre retrospective study.
  British journal of haematology 2023 Ge AY, Huang CY, Banerjee R, Knoche J, Chung A, Arora S, Martin TG, Wolf J, Wong SW, Wiita AP, Shah N
• Women with cirrhosis have lower self-rated health than men.
  Hepatology communications 2023 Wang M, Huang CY, Cullaro G, Covinsky K, Lai JC
• Association of Frailty With Health-Related Quality of Life in Liver Transplant Recipients.
  JAMA surgery 2023 Lai JC, Shui AM, Duarte-Rojo A, Rahimi RS, Ganger DR, Verna EC, Volk ML, Kappus M, Ladner DP, Boyarsky B, Segev DL, Gao Y, Huang CY, Singer JP
• Regression modeling for recurrent events possibly with an informative terminal event using R package reReg
  Journal of Statistical Software 2023 Chiou SY, Xu G, Yan J, Huang CY
• CT-quantified sarcopenic visceral obesity is associated with poor transplant waitlist mortality in patients with cirrhosis.
  Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 2023 Ha NB, Fan B, Shui AM, Huang CY, Brandman D, Lai JC
• Improved semiparametric estimation of the proportional rate model with recurrent event data.
  Biometrics 2022 Huang MY, Huang CY
• Semiparametric estimation of the transformation model by leveraging external aggregate data in the presence of population heterogeneity.
  Biometrics 2022 Cheng YJ, Liu YC, Tsai CY, Huang CY
• Inflammatory bowel disease type influences development of elevated liver enzymes.
  JGH open : an open access journal of gastroenterology and hepatology 2022 Cheng YW, McLean R, Sewell JL, Huang CY, Khalili M
• Assessment of Surgeon Performance of Advanced Open Surgical Skills Using a Microskills-Based Novel Curriculum.
  JAMA network open 2022 Greenberg AL, Karimzada MM, Brian R, Yap A, Luu HY, Ahmed S, Huang CY, Waits SA, Hirose R, Alseidi A, Rapp JH, O'Sullivan PS, Chern H, Syed SM
• Antibody and T-cell responses by ultra-deep T-cell receptor immunosequencing after COVID-19 vaccination in patients with plasma cell dyscrasias.
  British journal of haematology 2022 Chung A, Banbury B, Vignali M, Huang CY, Asoori S, Johnson R, Kurtz T, Arora S, Wong SW, Shah N, Martin TG, Wolf JL
• Endocrine surgeons are performing more thyroid lobectomies for low-risk differentiated thyroid cancer since the 2015 ATA guidelines.
  Surgery 2022 Conroy PC, Wilhelm A, Calthorpe L, Ullmann TM, Davis S, Huang CY, Shen WT, Gosnell J, Duh QY, Roman S, Sosa JA
• Association of a Dominant T-Cell Clone in Peripheral Blood With Time to Systemic Treatment in Patients With Stage IB Mycosis Fungoides.
  JAMA dermatology 2022 Raychaudhuri S, Charli-Joseph Y, Huang CY, Mintz MA, Pincus LB, Ai WZ
• Sarcopenic visceral obesity is associated with increased post-liver transplant mortality in acutely ill patients with cirrhosis.
  American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2022 Ha NB, Montano-Loza AJ, Carey EJ, Lin S, Shui AM, Huang CY, Dunn MA, Lai JC
• Analysis of a SARS-CoV-2 convalescent cohort identified a common strategy for escape of vaccine-induced anti-RBD antibodies by Beta and Omicron variants.
  EBioMedicine 2022 Chang MR, Ke H, Coherd CD, Wang Y, Mashima K, Kastrunes GM, Huang CY, Marasco WA
• Infectious complications in patients with relapsed refractory multiple myeloma after BCMA CAR T-cell therapy.
  Blood advances 2022 Kambhampati S, Sheng Y, Huang CY, Bylsma S, Lo M, Kennedy V, Natsuhara K, Martin T, Wolf J, Shah N, Wong SW
• BivRec: an R package for the nonparametric and semiparametric analysis of bivariate alternating recurrent events.
  BMC medical research methodology 2022 Castro-Pearson S, Sur A, Lee CH, Huang CY, Luo X
• Association of Primary Care Shortage Areas with Adverse Outcomes after Pediatric Liver Transplant.
  The Journal of pediatrics 2022 Shifman HP, Rasnick E, Huang CY, Beck AF, Bucuvalas J, Lai JC, Wadhwani SI
• Consent to organ offers from public health service "Increased Risk" donors decreases time to transplant and waitlist mortality.
  BMC medical ethics 2022 Kelly YM, Zarinsefat A, Tavakol M, Shui AM, Huang CY, Roberts JP
• Digital Life Coaching During Stem Cell Transplantation: Development and Usability Study.
  JMIR formative research 2022 Banerjee R, Huang CY, Dunn L, Knoche J, Ryan C, Brassil K, Jackson L, Patel D, Lo M, Arora S, Wong SW, Wolf J, Martin Iii T, Dhruva A, Shah N
• Geriatric assessment in adults age 50 years and older undergoing autologous hematopoietic cell transplantation for lymphoma.
  Journal of geriatric oncology 2022 Kennedy VE, Huang CY, Kaplan LD, Andreadis C, Ai WZ, Olin RL
• Patterns and Predictors of Functional Decline after Allogeneic Hematopoietic Cell Transplantation in Older Adults.
  Transplantation and cellular therapy 2022 Huang LW, Sheng Y, Andreadis C, Logan AC, Mannis GN, Smith CC, Gaensler KML, Martin TG, Damon LE, Huang CY, Olin RL
• Association between exposure to radioactive iodine after the Chernobyl accident and thyroid volume in Belarus 10-15 years later.
  Environmental health : a global access science source 2022 Chirikova E, McConnell RJ, O'Kane P, Yauseyenka V, Little MP, Minenko V, Drozdovitch V, Veyalkin I, Hatch M, Chan JM, Huang CY, Mabuchi K, Cahoon EK, Rozhko A, Zablotska LB
• Frailty, mortality, and health care utilization after liver transplantation: From the Multicenter Functional Assessment in Liver Transplantation (FrAILT) Study.
  Hepatology (Baltimore, Md.) 2021 Lai JC, Shui AM, Duarte-Rojo A, Ganger DR, Rahimi RS, Huang CY, Yao F, Kappus M, Boyarsky B, McAdams-Demarco M, Volk ML, Dunn MA, Ladner DP, Segev DL, Verna EC, Feng S, from the Multi-Center …
• Outcomes of SOT Recipients With COVID-19 in Different Eras of COVID-19 Therapeutics.
  Transplantation direct 2021 Sait AS, Chiang TP, Marr KA, Massie AB, Cochran W, Shah P, Brennan DC, Thomas AG, Mehta Steinke S, Permpalung N, Shoham S, Merlo C, Jain T, Boyarsky B, Charnaya O, Gurakar A, Sharma K, Durand CM, …
• Macrophage activation syndrome-like (MAS-L) manifestations following BCMA-directed CAR T cells in multiple myeloma.
  Blood advances 2021 Kennedy VE, Wong C, Huang CY, Kambhampati S, Wolf J, Martin TG, Shah N, Wong SW
• The Impact of Median Model for End-Stage Liver Disease at Transplant Minus 3 National Policy on Waitlist Outcomes in Patients With and Without Hepatocellular Carcinoma.
  Liver transplantation : official publication of the American Association for the Study of Liver Diseases and the International Liver Transplantation Society 2021 Bernards S, Hirose R, Yao FY, Jin C, Dodge JL, Huang CY, Mehta N
• Early Dynamics and Depth of Response in Multiple Myeloma Patients Treated With BCMA CAR-T Cells.
  Frontiers in oncology 2021 Wong SW, Shah N, Ledergor G, Martin T, Wolf J, Shui AM, Huang CY, Martinez-Lopez J
• Evaluation of subcutaneous daratumumab injections in the ambulatory care setting.
  Journal of oncology pharmacy practice : official publication of the International Society of Oncology Pharmacy Practitioners 2021 Tam AH, Jung Y, Young R, Huang CY, Wolf J, Shah N, Wong SW, Martin TG, Lo M
• Triangulating Evidence to Infer Pathways that Influence Ebola Virus Disease-Related Stigma and Clinical Findings among Survivors: An Observational Cohort Study.
  The American journal of tropical medicine and hygiene 2021 Kelly JD, Badio M, Drew C, Wilson B, Cooper JB, Glayweon M, Johnson K, Moses JS, Gayedu-Dennis D, Torres JM, Oldenburg CE, Davidson MC, Huang CY, Steward WT, Sneller MC, Rutherford GW, Reilly C, …
• Construct and Predictive Validity of Sarcopenia in Lung Transplant Candidates.
  Annals of the American Thoracic Society 2021 Maheshwari JA, Kolaitis NA, Anderson MR, Benvenuto L, Gao Y, Katz PP, Greenland J, Wolters PJ, Covinsky K, Hays SR, Kukreja J, Calabrese DR, Venado A, Shah RJ, Leard LE, Trinh B, Huang CY, Glidden D, …
• Cholesterol lowering drug use and breast cancer survival: the Multiethnic Cohort Study.
  Breast cancer research and treatment 2021 Moksud N, Loo LWM, Yang J, Huang CY, Haiman CA, Le Marchand L, Wilkens LR, Cheng I
• Additive rates model for recurrent event data with intermittently observed time-dependent covariates.
  Statistical methods in medical research 2021 Lyu T, Luo X, Huang CY, Sun Y
• Treatment of Acute Pain in Adults With Sickle Cell Disease in an Infusion Center Versus the Emergency Department : A Multicenter Prospective Cohort Study.
  Annals of internal medicine 2021 Lanzkron S, Little J, Wang H, Field JJ, Shows JR, Haywood C, Saheed M, Proudford M, Robertson D, Kincaid A, Burgess L, Green C, Seufert R, Brooks J, Piehet A, Griffin B, Arnold N, Frymark S, Wallace M…
• Accuracy of the Lymph Node Yield in Surgery for Papillary Thyroid Cancer in Children.
  World journal of surgery 2021 Yap A, Shui A, Gosnell J, Huang CY, Sosa JA, Roman S
• Synthesizing external aggregated information in the penalized Cox regression under population heterogeneity.
  Statistics in medicine 2021 Sheng Y, Sun Y, Huang CY, Kim MO
• Updated Results of TBCRC026: Phase II Trial Correlating Standardized Uptake Value With Pathological Complete Response to Pertuzumab and Trastuzumab in Breast Cancer.
  Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2021 Connolly RM, Leal JP, Solnes L, Huang CY, Carpenter A, Gaffney K, Abramson V, Carey LA, Liu MC, Rimawi M, Specht J, Storniolo AM, Valero V, Vaklavas C, Krop IE, Winer EP, Camp M, Miller RS, Wolff AC, …
• Phase 1b trial of isatuximab, an anti-CD38 monoclonal antibody, in combination with carfilzomib as treatment of relapsed/refractory multiple myeloma.
  Cancer 2021 Martin TG, Shah N, Richter J, Vesole DH, Wong SW, Huang CY, Madduri D, Jagannath S, Siegel DS, Biran N, Wolf JL, Parekh S, Cho HJ, Munster P, Richard S, Ziti-Ljajic S, Chari A
• Early Time-to-Tocilizumab after B Cell Maturation Antigen-Directed Chimeric Antigen Receptor T Cell Therapy in Myeloma.
  Transplantation and cellular therapy 2021 Banerjee R, Marsal J, Huang CY, Lo M, Kambhampati S, Kennedy VE, Arora S, Wolf JL, Martin TG, Wong SW, Shah N
• Center variation in long-term outcomes for socioeconomically deprived children.
  American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons 2021 Wadhwani SI, Huang CY, Gottlieb L, Beck AF, Bucuvalas J, Kotagal U, Lyles C, Lai JC
• Statistical inference on shape and size indexes for counting processes.
  Biometrika 2021 Sun Y, Chiou SH, Marr KA, Huang CY
• Synthesizing external aggregated information in the presence of population heterogeneity: A penalized empirical likelihood approach.
  Biometrics 2021 Sheng Y, Sun Y, Huang CY, Kim MO
• Impact of Polypharmacy Prior to Allogeneic Hematopoietic Stem Cell Transplantation in Older Adults.
  Transplantation and cellular therapy 2021 Sugidono M, Lo M, Young R, Rosario K, Jung Y, Huang CY, Sheng Y, Huang LW, Olin RL
• Reduced anxiety and changes in amygdala network properties in adolescents with training for awareness, resilience, and action (TARA).
  NeuroImage. Clinical 2020 Tymofiyeva O, Henje E, Yuan JP, Huang CY, Connolly CG, Ho TC, Bhandari S, Parks KC, Sipes BS, Yang TT, Xu D
• Heterogeneous Individual Risk Modeling of Recurrent Events.
  Biometrika 2020 Ma H, Peng L, Huang CY, Fu H
• Ofatumumab, Etoposide, and Cytarabine Intensive Mobilization Regimen in Patients with High-risk Relapsed/Refractory Diffuse Large B-Cell Lymphoma Undergoing Autologous Stem Cell Transplantation.
  Clinical lymphoma, myeloma & leukemia 2020 Kambhampati S, Hunter B, Varnavski A, Fakhri B, Kaplan L, Ai WZ, Pampaloni M, Huang CY, Martin T, Damon L, Andreadis CB
• Early acquisition and conversion of Pseudomonas aeruginosa in Hispanic youth with cystic fibrosis in the United States.
  Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society 2020 McGarry ME, Huang CY, Nielson DW, Ly NP
• Serial comprehensive geriatric and quality of life assessments in adults age ≥ 50 years undergoing autologous hematopoietic cell transplantation.
  Journal of geriatric oncology 2020 Nawas MT, Sheng Y, Huang CY, Andreadis C, Martin TG, Wolf JL, Ai WZ, Kaplan LD, Mannis GN, Logan AC, Damon LE, Olin RL
• Neural Correlates of Smartphone Dependence in Adolescents.
  Frontiers in human neuroscience 2020 Tymofiyeva O, Yuan JP, Kidambi R, Huang CY, Henje E, Rubinstein ML, Jariwala N, Max JE, Yang TT, Xu D
• Estimation of infection density and epidemic size of COVID-19 using the back-calculation algorithm.
  Health information science and systems 2020 Liu Y, Qin J, Fan Y, Zhou Y, Follmann DA, Huang CY
• Recurrent Events Analysis With Data Collected at Informative Clinical Visits in Electronic Health Records.
  Journal of the American Statistical Association 2020 Sun Y, McCulloch CE, Marr KA, Huang CY
• Synchronous Versus Metachronous Colorectal Liver Metastasis Yields Similar Survival in Modern Era.
  The Journal of surgical research 2020 Wisneski AD, Jin C, Huang CY, Warren R, Hirose K, Nakakura EK, Corvera CU
• Clinical value of measurable residual disease testing for assessing depth, duration, and direction of response in multiple myeloma.
  Blood advances 2020 Martinez-Lopez J, Wong SW, Shah N, Bahri N, Zhou K, Sheng Y, Huang CY, Martin T, Wolf J
• Frailty after lung transplantation is associated with impaired health-related quality of life and mortality.
  Thorax 2020 Venado A, Kolaitis NA, Huang CY, Gao Y, Glidden DV, Soong A, Sutter N, Katz PP, Greenland JR, Calabrese DR, Hays SR, Golden JA, Shah RJ, Leard LE, Kukreja J, Deuse T, Wolters PJ, Covinsky K, Blanc PD,…
• Genetic effect estimates in case-control studies when a continuous variable is omitted from the model
  Genetic Epidemiology 2020 Sheng Y, Huang CY, Lobach S, Zablotska L, Lobach I
• A unified approach for synthesizing population-level covariate effect information in semiparametric estimation with survival data.
  Statistics in medicine 2020 Huang CY, Qin J
• The Effects of a Remote-based Weight Loss Program on Adipocytokines, Metabolic Markers, and Telomere Length in Breast Cancer Survivors: the POWER-Remote Trial.
  Clinical cancer research : an official journal of the American Association for Cancer Research 2020 Santa-Maria CA, Coughlin JW, Sharma D, Armanios M, Blackford AL, Schreyer C, Dalcin A, Carpenter A, Jerome GJ, Armstrong DK, Chaudhry M, Cohen GI, Connolly RM, Fetting J, Miller RS, Smith KL, Snyder C…
• A single-center retrospective cohort analysis of venetoclax in relapsed/refractory multiple myeloma.
  Leukemia & lymphoma 2020 Kambhampati S, Galligan D, Huang CY, Wong S, Wolf J, Martin T, Shah N
• Generalized scale-change models for recurrent event processes under informative censoring.
  Statistica Sinica 2020 Xu G, Chiou SH, Yan J, Marr K, Huang CY
• A phase 2 study of GVAX colon vaccine with cyclophosphamide and pembrolizumab in patients with mismatch repair proficient advanced colorectal cancer.
  Cancer medicine 2019 Yarchoan M, Huang CY, Zhu Q, Ferguson AK, Durham JN, Anders RA, Thompson ED, Rozich NS, Thomas DL, Nauroth JM, Rodriguez C, Osipov A, De Jesus-Acosta A, Le DT, Murphy AG, Laheru D, Donehower RC, …
• Censored linear regression in the presence or absence of auxiliary survival information.
  Biometrics 2019 Sheng Y, Sun Y, Deng D, Huang CY
• Case-control versus case-only estimates of gene-environment interactions with common and misclassified clinical diagnosis.
  Genetic epidemiology 2019 Lobach I, Sheng Y, Lobach S, Zablotska L, Huang CY
• Functional Status as Measured by Geriatric Assessment Predicts Inferior Survival in Older Allogeneic Hematopoietic Cell Transplantation Recipients.
  Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation 2019 Huang LW, Sheng Y, Andreadis C, Logan AC, Mannis GN, Smith CC, Gaensler KML, Martin TG, Damon LE, Steinman MA, Huang CY, Olin RL
• Application of machine learning to structural connectome to predict symptom reduction in depressed adolescents with cognitive behavioral therapy (CBT).
  NeuroImage. Clinical 2019 Tymofiyeva O, Yuan JP, Huang CY, Connolly CG, Henje Blom E, Xu D, Yang TT
• Reply to E. Hindié et al.
  Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2019 Connolly RM, Huang CY, Stearns V, Wahl RL
• TBCRC026: Phase II Trial Correlating Standardized Uptake Value With Pathologic Complete Response to Pertuzumab and Trastuzumab in Breast Cancer.
  Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2019 Connolly RM, Leal JP, Solnes L, Huang CY, Carpenter A, Gaffney K, Abramson V, Carey LA, Liu MC, Rimawi M, Specht J, Storniolo AM, Valero V, Vaklavas C, Krop IE, Winer EP, Camp M, Miller RS, Wolff AC, …
• Limitation in Patient-Reported Function Is Associated with Inferior Survival in Older Adults Undergoing Autologous Hematopoietic Cell Transplantation.
  Biology of blood and marrow transplantation : journal of the American Society for Blood and Marrow Transplantation 2019 Nawas MT, Andreadis C, Martin TG, Wolf JL, Ai WZ, Kaplan LD, Mannis GN, Logan AC, Damon LE, Huang CY, Olin RL
• SEMIPARAMETRIC REGRESSION MODEL FOR RECURRENT BACTERIAL INFECTIONS AFTER HEMATOPOIETIC STEM CELL TRANSPLANTATION.
  Statistica Sinica 2019 Lee CH, Huang CY, DeFor TE, Brunstein CG, Weisdorf DJ, Luo X
• Increased acute care utilization in a prospective cohort of adults with sickle cell disease.
  Blood advances 2018 Lanzkron S, Little J, Field J, Shows JR, Wang H, Seufert R, Brooks J, Varadhan R, Haywood C, Saheed M, Huang CY, Griffin B, Frymark S, Piehet A, Robertson D, Proudford M, Kincaid A, Green C, Burgess L…
• Semiparametric Regression Analysis of Panel Count Data: A Practical Review.
  International statistical review = Revue internationale de statistique 2018 Chiou SH, Huang CY, Xu G, Yan J
• Missing Information Principle: A Unified Approach for General Truncated and Censored Survival Data Problems.
  Statistical science : a review journal of the Institute of Mathematical Statistics 2018 Sun Y, Qin J, Huang CY
• Streptococcal group A, C and G pharyngitis in school children: a prospective cohort study in Southern India.
  Epidemiology and infection 2018 Jose JJM, Brahmadathan KN, Abraham VJ, Huang CY, Morens D, Hoe NP, Follmann DA, Krause RM
• Semiparametric estimation of the accelerated mean model with panel count data under informative examination times.
  Biometrics 2017 Chiou SH, Xu G, Yan J, Huang CY
• Sieve analysis using the number of infecting pathogens.
  Biometrics 2017 Follmann D, Huang CY
• Induced smoothing for rank-based regression with recurrent gap time data.
  Statistics in medicine 2017 Lyu T, Luo X, Xu G, Huang CY
• Semiparametric regression analysis for alternating recurrent event data.
  Statistics in medicine 2017 Lee CH, Huang CY, Xu G, Luo X
• Stromal Annexin A2 expression is predictive of decreased survival in pancreatic cancer.
  Oncotarget 2017 Murphy AG, Foley K, Rucki AA, Xia T, Jaffee EM, Huang CY, Zheng L
• Estimation and Inference of Quantile Regression for Survival Data Under Biased Sampling.
  Journal of the American Statistical Association 2017 Xu G, Sit T, Wang L, Huang CY
• Long-term survival benefit of upfront chemotherapy in patients with newly diagnosed borderline resectable pancreatic cancer.
  Cancer medicine 2017 Shrestha B, Sun Y, Faisal F, Kim V, Soares K, Blair A, Herman JM, Narang A, Dholakia AS, Rosati L, Hacker-Prietz A, Chen L, Laheru DA, De Jesus-Acosta A, Le DT, Donehower R, Azad N, Diaz LA, Murphy A,…
• Activation of tumor suppressor LKB1 by honokiol abrogates cancer stem-like phenotype in breast cancer via inhibition of oncogenic Stat3.
  Oncogene 2017 Sengupta S, Nagalingam A, Muniraj N, Bonner MY, Mistriotis P, Afthinos A, Kuppusamy P, Lanoue D, Cho S, Korangath P, Shriver M, Begum A, Merino VF, Huang CY, Arbiser JL, Matsui W, Gyorffy B, …
• Joint scale-change models for recurrent events and failure time.
  Journal of the American Statistical Association 2017 Xu G, Chiou SH, Huang CY, Wang MC, Yan J
• Nonparametric Benefit-Risk Assessment Using Marker Process in the Presence of a Terminal Event.
  Journal of the American Statistical Association 2017 Sun Y, Huang CY, Wang MC
• Efficient Estimation of the Cox Model With Auxiliary Subgroup Survival Information.
  Journal of the American Statistical Association 2016 Huang CY, Qin J, Tsai HT
• Who really gets strep sore throat? Confounding and effect modification of a time-varying exposure on recurrent events.
  Statistics in medicine 2016 Follmann D, Huang CY, Gabriel E
• Nonparametric analysis of bivariate gap time with competing risks.
  Biometrics 2016 Huang CY, Wang C, Wang MC
• IGHV1-69 polymorphism modulates anti-influenza antibody repertoires, correlates with IGHV utilization shifts and varies by ethnicity.
  Scientific reports 2016 Avnir Y, Watson CT, Glanville J, Peterson EC, Tallarico AS, Bennett AS, Qin K, Fu Y, Huang CY, Beigel JH, Breden F, Zhu Q, Marasco WA
• Recurrent event data analysis with intermittently observed time-varying covariates.
  Statistics in medicine 2016 Li S, Sun Y, Huang CY, Follmann DA, Krause R
• Nonparametric methods for analyzing recurrent gap time data with application to infections after hematopoietic cell transplant.
  Biometrics 2015 Lee CH, Luo X, Huang CY, DeFor TE, Brunstein CG, Weisdorf DJ
• Plasmodium falciparum Gametocyte-Specific Antibody Profiling Reveals Boosting through Natural Infection and Identifies Potential Markers of Gametocyte Exposure.
  Infection and immunity 2015 Skinner J, Huang CY, Waisberg M, Felgner PL, Doumbo OK, Ongoiba A, Kayentao K, Traore B, Crompton PD, Williamson KC
• Impact of acute malaria on pre-existing antibodies to viral and vaccine antigens in mice and humans.
  PloS one 2015 Banga S, Coursen JD, Portugal S, Tran TM, Hancox L, Ongoiba A, Traore B, Doumbo OK, Huang CY, Harty JT, Crompton PD
• Semiparametric likelihood inference for left-truncated and right-censored data.
  Biostatistics (Oxford, England) 2015 Huang CY, Ning J, Qin J
• Incorporating founder virus information in vaccine field trials.
  Biometrics 2015 Follmann D, Huang CY
• Assessment of atherosclerosis in chronic granulomatous disease.
  Circulation 2014 Sibley CT, Estwick T, Zavodni A, Huang CY, Kwan AC, Soule BP, Long Priel DA, Remaley AT, Rudman Spergel AK, Turkbey EB, Kuhns DB, Holland SM, Malech HL, Zarember KA, Bluemke DA, Gallin JI
• Co-infection of long-term carriers of Plasmodium falciparum with Schistosoma haematobium enhances protection from febrile malaria: a prospective cohort study in Mali.
  PLoS neglected tropical diseases 2014 Doumbo S, Tran TM, Sangala J, Li S, Doumtabe D, Kone Y, Traoré A, Bathily A, Sogoba N, Coulibaly ME, Huang CY, Ongoiba A, Kayentao K, Diallo M, Dramane Z, Nutman TB, Crompton PD, Doumbo O, Traore B
• Statistical inference methods for recurrent event processes with shape and size parameters.
  Biometrika 2014 Wang MC, Huang CY
• Parasite burden and severity of malaria in Tanzanian children.
  The New England journal of medicine 2014 Gonçalves BP, Huang CY, Morrison R, Holte S, Kabyemela E, Prevots DR, Fried M, Duffy PE
• Molecular signatures of hemagglutinin stem-directed heterosubtypic human neutralizing antibodies against influenza A viruses.
  PLoS pathogens 2014 Avnir Y, Tallarico AS, Zhu Q, Bennett AS, Connelly G, Sheehan J, Sui J, Fahmy A, Huang CY, Cadwell G, Bankston LA, McGuire AT, Stamatatos L, Wagner G, Liddington RC, Marasco WA
• Combined estimating equation approaches for semiparametric transformation models with length-biased survival data.
  Biometrics 2014 Cheng YJ, Huang CY
• BCG vaccination in patients with severe combined immunodeficiency: complications, risks, and vaccination policies.
  The Journal of allergy and clinical immunology 2014 Marciano BE, Huang CY, Joshi G, Rezaei N, Carvalho BC, Allwood Z, Ikinciogullari A, Reda SM, Gennery A, Thon V, Espinosa-Rosales F, Al-Herz W, Porras O, Shcherbina A, Szaflarska A, Kiliç S, Franco JL,…
• Risk of cardiovascular adverse events from trastuzumab (Herceptin(®)) in elderly persons with breast cancer: a population-based study.
  Breast cancer research and treatment 2014 Tsai HT, Isaacs C, Fu AZ, Warren JL, Freedman AN, Barac A, Huang CY, Potosky AL
• Naturally acquired antibodies specific for Plasmodium falciparum reticulocyte-binding protein homologue 5 inhibit parasite growth and predict protection from malaria.
  The Journal of infectious diseases 2013 Tran TM, Ongoiba A, Coursen J, Crosnier C, Diouf A, Huang CY, Li S, Doumbo S, Doumtabe D, Kone Y, Bathily A, Dia S, Niangaly M, Dara C, Sangala J, Miller LH, Doumbo OK, Kayentao K, Long CA, Miura K, …
• B-cell activating factor (BAFF) is elevated in chronic granulomatous disease.
  Clinical immunology (Orlando, Fla.) 2013 Matharu K, Zarember KA, Marciano BE, Kuhns DB, Spalding C, Garofalo M, Dimaggio T, Estwick T, Huang CY, Fink D, Priel DL, Fleisher TA, Holland SM, Malech HL, Gallin JI
• The impact of genetic susceptibility to systemic lupus erythematosus on placental malaria in mice.
  PloS one 2013 Waisberg M, Lin CK, Huang CY, Pena M, Orandle M, Bolland S, Pierce SK
• An intensive longitudinal cohort study of Malian children and adults reveals no evidence of acquired immunity to Plasmodium falciparum infection.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2013 Tran TM, Li S, Doumbo S, Doumtabe D, Huang CY, Dia S, Bathily A, Sangala J, Kone Y, Traore A, Niangaly M, Dara C, Kayentao K, Ongoiba A, Doumbo OK, Traore B, Crompton PD
• Quantile regression for recurrent gap time data.
  Biometrics 2013 Luo X, Huang CY, Wang L
• Bevacizumab use and risk of cardiovascular adverse events among elderly patients with colorectal cancer receiving chemotherapy: a population-based study.
  Annals of oncology : official journal of the European Society for Medical Oncology 2013 Tsai HT, Marshall JL, Weiss SR, Huang CY, Warren JL, Freedman AN, Fu AZ, Sansbury LB, Potosky AL
• Clinical characteristics and outcomes of influenza and other influenza-like illnesses in Mexico City.
  International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases 2013 Galindo-Fraga A, Ortiz-Hernández AA, Ramírez-Venegas A, Vázquez RV, Moreno-Espinosa S, Llamosas-Gallardo B, Pérez-Patrigeon S, Salinger M, Freimanis L, Huang CY, Gu W, Guerrero ML, Beigel J, Ruiz-…
• Semiparametric estimation for the additive hazards model with left-truncated and right-censored data.
  Biometrika 2013 Huang CY, Qin J
• Composite Partial Likelihood Estimation Under Length-Biased Sampling, With Application to a Prevalent Cohort Study of Dementia.
  Journal of the American Statistical Association 2012 Huang CY, Qin J
• A maximum pseudo-profile likelihood estimator for the Cox model under length-biased sampling.
  Biometrika 2012 Huang CY, Qin J, Follmann DA
• Development of functional and molecular correlates of vaccine-induced protection for a model intracellular pathogen, F. tularensis LVS.
  PLoS pathogens 2012 De Pascalis R, Chou AY, Bosio CM, Huang CY, Follmann DA, Elkins KL
• Differential effects of HIV viral load and CD4 count on proliferation of naive and memory CD4 and CD8 T lymphocytes.
  Blood 2011 Srinivasula S, Lempicki RA, Adelsberger JW, Huang CY, Roark J, Lee PI, Rupert A, Stevens R, Sereti I, Lane HC, Di Mascio M, Kovacs JA
• Wide prevalence of heterosubtypic broadly neutralizing human anti-influenza A antibodies.
  Clinical infectious diseases : an official publication of the Infectious Diseases Society of America 2011 Sui J, Sheehan J, Hwang WC, Bankston LA, Burchett SK, Huang CY, Liddington RC, Beigel JH, Marasco WA
• Nonparametric estimation for length-biased and right-censored data.
  Biometrika 2011 Huang CY, Qin J
• Analysis of recurrent gap time data using the weighted risk-set method and the modified within-cluster resampling method.
  Statistics in medicine 2011 Luo X, Huang CY
• Genetic susceptibility to systemic lupus erythematosus protects against cerebral malaria in mice.
  Proceedings of the National Academy of Sciences of the United States of America 2010 Waisberg M, Tarasenko T, Vickers BK, Scott BL, Willcocks LC, Molina-Cruz A, Pierce MA, Huang CY, Torres-Velez FJ, Smith KG, Barillas-Mury C, Miller LH, Pierce SK, Bolland S
• A model checking method for the proportional hazards model with recurrent gap time data.
  Biostatistics (Oxford, England) 2010 Huang CY, Luo X, Follmann DA
• Interferon-alpha produces significant decreases in HIV load.
  Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research 2010 Tavel JA, Huang CY, Shen J, Metcalf JA, Dewar R, Shah A, Vasudevachari MB, Follmann DA, Herpin B, Davey RT, Polis MA, Kovacs J, Masur H, Lane HC
• The Plasmodium falciparum-specific human memory B cell compartment expands gradually with repeated malaria infections.
  PLoS pathogens 2010 Weiss GE, Traore B, Kayentao K, Ongoiba A, Doumbo S, Doumtabe D, Kone Y, Dia S, Guindo A, Traore A, Huang CY, Miura K, Mircetic M, Li S, Baughman A, Narum DL, Miller LH, Doumbo OK, Pierce SK, Crompton…
• In vitro growth-inhibitory activity and malaria risk in a cohort study in mali.
  Infection and immunity 2009 Crompton PD, Miura K, Traore B, Kayentao K, Ongoiba A, Weiss G, Doumbo S, Doumtabe D, Kone Y, Huang CY, Doumbo OK, Miller LH, Long CA, Pierce SK
• The TLR9 agonist CpG fails to enhance the acquisition of Plasmodium falciparum-specific memory B cells in semi-immune adults in Mali.
  Vaccine 2009 Traore B, Koné Y, Doumbo S, Doumtabé D, Traoré A, Crompton PD, Mircetic M, Huang CY, Kayentao K, Dicko A, Sagara I, Ellis RD, Miura K, Guindo A, Miller LH, Doumbo OK, Pierce SK
• Safety and immunogenicity of multiple and higher doses of an inactivated influenza A/H5N1 vaccine.
  The Journal of infectious diseases 2009 Beigel JH, Voell J, Huang CY, Burbelo PD, Lane HC
• Semiparametric analysis for recurrent event data with time-dependent covariates and informative censoring.
  Biometrics 2009 Huang CY, Qin J, Wang MC
• Antifungal activities of natural and synthetic iron chelators alone and in combination with azole and polyene antibiotics against Aspergillus fumigatus.
  Antimicrobial agents and chemotherapy 2009 Zarember KA, Cruz AR, Huang CY, Gallin JI
• The TLR9 ligand CpG promotes the acquisition of Plasmodium falciparum-specific memory B cells in malaria-naive individuals.
  Journal of immunology (Baltimore, Md. : 1950) 2009 Crompton PD, Mircetic M, Weiss G, Baughman A, Huang CY, Topham DJ, Treanor JJ, Sanz I, Lee FE, Durbin AP, Miura K, Narum DL, Ellis RD, Malkin E, Mullen GE, Miller LH, Martin LB, Pierce SK
• Half- vs full-dose trivalent inactivated influenza vaccine (2004-2005): age, dose, and sex effects on immune responses.
  Archives of internal medicine 2008 Engler RJ, Nelson MR, Klote MM, VanRaden MJ, Huang CY, Cox NJ, Klimov A, Keitel WA, Nichol KL, Carr WW, Treanor JJ, Walter Reed Health Care System Influenza Vaccine Consortium
• Sickle cell trait is associated with a delayed onset of malaria: implications for time-to-event analysis in clinical studies of malaria.
  The Journal of infectious diseases 2008 Crompton PD, Traore B, Kayentao K, Doumbo S, Ongoiba A, Diakite SA, Krause MA, Doumtabe D, Kone Y, Weiss G, Huang CY, Doumbia S, Guindo A, Fairhurst RM, Miller LH, Pierce SK, Doumbo OK
• CD4 T cell survival after intermittent interleukin-2 therapy is predictive of an increase in the CD4 T cell count of HIV-infected patients.
  The Journal of infectious diseases 2008 Read SW, Lempicki RA, Di Mascio M, Srinivasula S, Burke R, Sachau W, Bosche M, Adelsberger JW, Sereti I, Davey RT, Tavel JA, Huang CY, Issaq HJ, Fox SD, Lane H, Kovacs JA
• Empirical Likelihood-Based Estimation of the Treatment Effect in a Pretest-Posttest Study.
  Journal of the American Statistical Association 2008 Huang CY, Qin J, Follmann DA
• A comparison of various rate functions of a recurrent event process in the presence of a terminal event.
  Statistical methods in medical research 2008 Luo X, Wang MC, Huang CY
• The Statistical Analysis of Recurrent Events by COOK, R. J. and LAWLESS, J. F
  Biometrics 2008 Huang CY, Luo X
• Empirical likelihood‐based inference for genetic mixture models
  Canadian Journal of Statistics 2007 Huang CY, Qin J, Zou F
• Comparison of resource utilization and clinical outcomes between teaching and nonteaching medical services.
  Journal of hospital medicine 2007 Khaliq AA, Huang CY, Ganti AK, Invie K, Smego RA
• Cryptococcosis and idiopathic CD4 lymphocytopenia.
  Medicine 2007 Zonios DI, Falloon J, Huang CY, Chaitt D, Bennett JE
• Monitoring rare serious adverse events from a new treatment and testing for a difference from historical controls.
  Clinical trials (London, England) 2007 Fay MP, Huang CY, Twum-Danso NA
• Analysing panel count data with informative observation times.
  Biometrika 2006 Huang CY, Wang MC, Zhang Y
• Disciplinary action against physicians: who is likely to get disciplined?
  The American journal of medicine 2005 Khaliq AA, Dimassi H, Huang CY, Narine L, Smego RA
• Nonparametric estimation of the bivariate recurrence time distribution.
  Biometrics 2005 Huang CY, Wang MC
• Kernel Estimation of Rate Function for Recurrent Event Data.
  Scandinavian journal of statistics, theory and applications 2005 Chiang CT, Wang MC, Huang CY
• Are transgender persons at higher risk for HIV than other sexual minorities? A comparison of HIV prevalence and risks
  International Journal of Transgenderism 2005 Bockting W, Huang CY, Ding H, Robinson BB, Rosser BS
• Joint Modeling and Estimation for Recurrent Event Processes and Failure Time Data.
  Journal of the American Statistical Association 2004 Huang CY, Wang MC
• On stability of trimmed sums
  Probability and Mathematical Statistics 2003 Hu TC, Huang C, Rosalsky A
• Familial influence on age of onset among siblings with Huntington disease.
  American journal of medical genetics 2001 Rosenblatt A, Brinkman RR, Liang KY, Almqvist EW, Margolis RL, Huang CY, Sherr M, Franz ML, Abbott MH, Hayden MR, Ross CA
• A unified sampling approach for multipoint analysis of qualitative and quantitative traits in sib pairs.
  American journal of human genetics 2000 Liang KY, Huang CY, Beaty TH