Audrey Kishishita, PhD
Postdoctoral Scholar
Laboratory Medicine
School of Medicine

Publications (11)

Top publication keywords:
Receptors, AndrogenMacrophagesCell Line, TumorProteomicsGATA2 Transcription FactorMultiple MyelomaNuclear Receptor CoactivatorsProteomeMembrane ProteinsAutophagyMass SpectrometrySoftwarePeptidesBiomarkers, TumorFerritins

• Extending structural surfaceomics to identify aberrant conformations of tumor surface proteins as potential immunotherapy targets.
  bioRxiv : the preprint server for biology 2026 Kishishita A, Cismoski S, Grant T, Deo R, Prudhvi S, Sue C, Barpanda A, Yu C, Shenoy S, Berman S, Reeves AG, Li H, Liu T, Naik A, Biswas D, Jiao F, He Y, Hancock M, Dalal R, Zalevsky A, Hoopmann MR, …
• Multivalent recognition of ferritin by full-length NCOA4 enables robust ferritinophagy.
  Protein science : a publication of the Protein Society 2026 Srivastava AK, Terashi G, Viner R, Kishishita A, Wiita AP, Rajendran A, Zoo Y, Papaefthymiou GC, Kihara D, Bou-Abdallah F
• Enhanced cell surface enrichment and data-independent acquisition for in-depth profiling of multiple myeloma cell lines.
  Methods in cell biology 2026 Kishishita A, Chen SY, Barpanda A, Wiita AP
• Genome-scale CRISPR screens identify PTGES3 as a direct modulator of androgen receptor function in advanced prostate cancer.
  Nature genetics 2025 Li H, Melnyk JE, Fu BXH, Shrestha R, Zhang M, Sjöström M, Feng S, Anderson JA, Han W, Chesner LN, Shin HJ, Farsh T, Suarez HJ, Nath S, Chou J, Das R, Egusa EA, Calvert M, Kishishita A, Barpanda A, Zhu…
• AlphaCross-XL: A Seamless Tool for Automated and Proteome-Scale Mapping of Cross-Linked Peptides Onto 3D Protein Structures.
  Molecular & cellular proteomics : MCP 2025 Shenoy SV, Biswas D, Zalevsky A, Kishishita A, Verma A, Upadhay I, He Y, Sali A, Viner R, Mandal K, Srivastava S, Wiita AP

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• Exploitable mechanisms of antibody and CAR mediated macrophage cytotoxicity.
  Nature communications 2025 Liu T, Zhang M, Farsh T, Li H, Kishishita A, Barpanda A, Leung SG, Zhu J, Jung H, Hua JT, Zhu X, Kim AB, Goo YA, Son M, Kim J, Subramanian A, Sjöström M, Fuh KC, Chapman JS, Carnevale J, Gilbert LA, …
• Genome-wide CRISPR screens identify PTGES3 as a novel AR modulator.
  bioRxiv : the preprint server for biology 2025 Li H, Melnyk JE, Fu BXH, Shrestha R, Zhang M, Sjöström M, Feng S, Anderson JA, Han W, Chesner LN, Shin HJ, Farsh T, Suarez HJ, Nath S, Chou J, Das R, Egusa EA, Zhu J, Winters A, Maheshwari A, Hua JT, …
• Functional multiomics reveals genetic and pharmacologic regulation of surface CD38 in multiple myeloma.
  Blood neoplasia 2024 Choudhry P, Kasap C, Patiño-Escobar B, Gugliemini O, Geng H, Sarin V, Kang A, Kishishita A, Rampersaud S, Sarah L, Lin YT, Paranjape N, Ramkumar P, Patton JC, Marcoulis M, Wang D, Phojanakong P, Steri…
• Allosteric HSP70 inhibitors perturb mitochondrial proteostasis and overcome proteasome inhibitor resistance in multiple myeloma.
  Cell chemical biology 2022 Ferguson ID, Lin YT, Lam C, Shao H, Tharp KM, Hale M, Kasap C, Mariano MC, Kishishita A, Patiño Escobar B, Mandal K, Steri V, Wang D, Phojanakong P, Tuomivaara ST, Hann B, Driessen C, Van Ness B, …
• The surfaceome of multiple myeloma cells suggests potential immunotherapeutic strategies and protein markers of drug resistance.
  Nature communications 2022 Ferguson ID, Patiño-Escobar B, Tuomivaara ST, Lin YT, Nix MA, Leung KK, Kasap C, Ramos E, Nieves Vasquez W, Talbot A, Hale M, Naik A, Kishishita A, Choudhry P, Lopez-Girona A, Miao W, Wong SW, Wolf JL…
• Complete inhibition of a polyol nucleation by a micromolar biopolymer additive.
  Cell reports. Physical science 2022 Wen X, Wang S, Ramji R, Butler LO, Bagdagulyan Y, Kishishita A, Golen JA, Rheingold AL, Kim SK, Goddard WA, Pascal TA