Ashraya Ravikumar, PhD
Postdoctoral Scholar
Bioengineering
School of Pharmacy

Publications (6)

Top publication keywords:
ThermodynamicsPeptide MappingMolecular Dynamics SimulationProtein ConformationProteinsPeptidesAlgorithmsSoftwareAmino Acid SequenceDipeptides

• Uncovering Protein Ensembles: Automated Multiconformer Model Building for X-ray Crystallography and Cryo-EM.
  bioRxiv : the preprint server for biology 2023 Wankowicz SA, Ravikumar A, Sharma S, Riley BT, Raju A, Hogan DW, van den Bedem H, Keedy DA, Fraser JS
• Comparison of side-chain dispersion in protein structures determined by cryo-EM and X-ray crystallography.
  IUCrJ 2021 Ravikumar A, Gopnarayan MN, Subramaniam S, Srinivasan N
• Hypervariability of accessible and inaccessible conformational space of proteins.
  Current research in structural biology 2021 Ravikumar A, Srinivasan N
• Conformational Strain Indicated by Ramachandran Angles for the Protein Backbone Is Only Weakly Related to the Flexibility.
  The journal of physical chemistry. B 2021 Ravikumar A, de Brevern AG, Srinivasan N
• Stereochemical Assessment of (φ,ψ) Outliers in Protein Structures Using Bond Geometry-Specific Ramachandran Steric-Maps.
  Structure (London, England : 1993) 2019 Ravikumar A, Ramakrishnan C, Srinivasan N
• Protein stabilization by tuning the steric restraint at the reverse turn.
  Chemical science 2018 Lahiri P, Verma H, Ravikumar A, Chatterjee J