Amy Fan, PhD
Postdoctoral Scholar
Pathology
School of Medicine

Awards

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• Gerald J. Lieberman Fellowship, Stanford University, 2021-2022
• International Society of Experimental Hematology Travel Grant, Stanford University, 2021
• James W. Lyons Award, Stanford University, 2021
• ASH Abstract Achievement Award, 2020
• Best Graduate Student Talk, Stanford Immunology, 2020
• Excellence in Advocacy, Stanford University, 2019
• NSF GRFP, Stanford University, 2017-2020
• Stanford Graduate Fellowship, Stanford University, 2016-2021
• Gene Brown Prize for Teaching, MIT, 2015
• Amgen Scholar Program, MIT, 2014

Education & Training

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• PhD Immunology Stanford University 08/2023
• BS Biology MIT 02/2015

Websites

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• Personal Website (amycfan.su.domains)

Publications (16)

Top publication keywords:
RNA, BacterialLeukemiaDioxygenasesMyelodysplastic SyndromesCancer VaccinesInterleukin-3Core Binding Factor Alpha 2 SubunitPreleukemiaAllergy and ImmunologyHost-Parasite InteractionsResearch PersonnelGene Expression ProfilingOnline SystemsSequence Analysis, RNALeukemia, Myeloid, Acute

• DNMT3AR882H Is Not Required for Disease Maintenance in Primary Human AML, but Is Associated With Increased Leukemia Stem Cell Frequency.
  bioRxiv : the preprint server for biology 2024 Köhnke T, Karigane D, Hilgart E, Fan AC, Kayamori K, Miyauchi M, Collins CT, Suchy FP, Rangavajhula A, Feng Y, Nakauchi Y, Martinez-Montes E, Fowler JL, Loh KM, Nakauchi H, Koldobskiy MA, Feinberg AP,…
• A single cell framework identifies functionally and molecularly distinct multipotent progenitors in adult human hematopoiesis.
  bioRxiv : the preprint server for biology 2024 Ediriwickrema A, Nakauchi Y, Fan AC, Köhnke T, Hu X, Luca BA, Kim Y, Ramakrishnan S, Nakamoto M, Karigane D, Linde MH, Azizi A, Newman AM, Gentles AJ, Majeti R
• Human ASXL1-Mutant Hematopoiesis Is Driven by a Truncated Protein Associated with Aberrant Deubiquitination of H2AK119.
  Blood cancer discovery 2024 Köhnke T, Nuno KA, Alder CC, Gars EJ, Phan P, Fan AC, Majeti R
• Genome engineering with Cas9 and AAV repair templates generates frequent concatemeric insertions of viral vectors.
  Nature biotechnology 2024 Suchy FP, Karigane D, Nakauchi Y, Higuchi M, Zhang J, Pekrun K, Hsu I, Fan AC, Nishimura T, Charlesworth CT, Bhadury J, Nishimura T, Wilkinson AC, Kay MA, Majeti R, Nakauchi H
• IDH1-Mutant Preleukemic Hematopoietic Stem Cells Can Be Eliminated by Inhibition of Oxidative Phosphorylation.
  Blood cancer discovery 2024 Landberg N, Köhnke T, Feng Y, Nakauchi Y, Fan AC, Linde MH, Karigane D, Lim K, Sinha R, Malcovati L, Thomas D, Majeti R

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• IDH1-mutant preleukemic hematopoietic stem cells can be eliminated by inhibition of oxidative phosphorylation.
  Blood cancer discovery 2023 Landberg N, Köhnke T, Feng Y, Nakauchi Y, Fan AC, Linde MH, Karigane D, Lim K, Sinha R, Malcovati L, Thomas D, Majeti R
• RUNX1 loss renders hematopoietic and leukemic cells dependent on IL-3 and sensitive to JAK inhibition.
  The Journal of clinical investigation 2023 Fan AC, Nakauchi Y, Bai L, Azizi A, Nuno KA, Zhao F, Köhnke T, Karigane D, Cruz-Hernandez D, Reinisch A, Khatri P, Majeti R
• Reprogramming Cancer into Antigen-Presenting Cells as a Novel Immunotherapy.
  Cancer discovery 2023 Linde MH, Fan AC, Köhnke T, Trotman-Grant AC, Gurev SF, Phan P, Zhao F, Haddock NL, Nuno KA, Gars EJ, Stafford M, Marshall PL, Dove CG, Linde IL, Landberg N, Miller LP, Majzner RG, Zhang TY, Majeti R
• The Cell Type-Specific 5hmC Landscape and Dynamics of Healthy Human Hematopoiesis and TET2-Mutant Preleukemia.
  Blood cancer discovery 2022 Nakauchi Y, Azizi A, Thomas D, Corces MR, Reinisch A, Sharma R, Cruz Hernandez D, Köhnke T, Karigane D, Fan A, Martinez-Krams D, Stafford M, Kaur S, Dutta R, Phan P, Ediriwickrema A, McCarthy E, Ning …
• Black In Immuno: harnessing social media and digital platforms to connect the dots.
  Nature reviews. Immunology 2021 Babdor J, Fan AC, Wane M, Mbiribindi B, Mobley AS, Noel JC, Kouame E
• Black in Immuno Week: Who We Are, What We Did, and Why It Matters.
  Journal of immunology (Baltimore, Md. : 1950) 2021 Kouame E, Noel JC, Wane M, Babdor J, Caslin HL, Fan A, Mbiribindi B, Sattler S, Mobley AS
• NOT-Gated CD93 CAR T Cells Effectively Target AML with Minimized Endothelial Cross-Reactivity.
  Blood cancer discovery 2021 Richards RM, Zhao F, Freitas KA, Parker KR, Xu P, Fan A, Sotillo E, Daugaard M, Oo HZ, Liu J, Hong WJ, Sorensen PH, Chang HY, Satpathy AT, Majzner RG, Majeti R, Mackall CL
• Niche-directed therapy in acute myeloid leukemia: optimization of stem cell competition for niche occupancy.
  Leukemia & lymphoma 2021 Patel SA, Dalela D, Fan AC, Lloyd MR, Zhang TY
• Hybridization-based capture of pathogen mRNA enables paired host-pathogen transcriptional analysis.
  Scientific reports 2019 Betin V, Penaranda C, Bandyopadhyay N, Yang R, Abitua A, Bhattacharyya RP, Fan A, Avraham R, Livny J, Shoresh N, Hung DT
• scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing.
  Genome biology 2017 Avital G, Avraham R, Fan A, Hashimshony T, Hung DT, Yanai I
• A highly multiplexed and sensitive RNA-seq protocol for simultaneous analysis of host and pathogen transcriptomes.
  Nature protocols 2016 Avraham R, Haseley N, Fan A, Bloom-Ackermann Z, Livny J, Hung DT